Gene family  

Sub-families
ORTHO001828 (35 genes in 20 species)
ORTHO009012 (21 genes in 14 species)
ORTHO012807 (15 genes in 11 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (6 genes)
fve
Fragaria vesca (13 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (16 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (11 genes)
ptr
Populus trichocarpa (13 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (11 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (6 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (6 genes)



The gene family HOM000783 has 138 genes in 21 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 138 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G20720 aly name=fgenesh2_kg.3__2134__AT3G19184.1;pid=479433;prot=eq;tid=479433 + scaffold_3 No
AL8G08310 aly name=fgenesh1_pm.C_scaffold_8000473;pid=331130;prot=eq;tid=331130 - scaffold_8 No
AL8G24100 aly name=Al_scaffold_0008_2296;pid=886032;prot=eq;tid=917545 + scaffold_8 No
AT3G19184 ath AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G42700.1); Has 304 Blast hits to 291 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).;AP2/B3-like transcriptional factor family protein transcript=eq;prot=eq; + 3 No
AT5G42700 ath AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G19184.1); Has 276 Blast hits to 264 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 271; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;AP2/B3-like transcriptional factor family protein transcript=eq;prot=eq; + 5 No
AT5G58280 ath AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G19184.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;AP2/B3-like transcriptional factor family protein transcript=eq;prot=eq; + 5 No
BD1G45517 bdi pid=Bradi1g45517.1;tid=Bradi1g45517.1;GeneName=Bradi1g45517;transcript=eq;prot=eq - Bd1 No
BD1G60530 bdi ABI3VP1 transcription factor pid=Bradi1g60530.1;tid=Bradi1g60530.1;GeneName=Bradi1g60530;Name=BdABI14;transcript=eq;prot=eq - Bd1 No
BD1G72330 bdi ABI3VP1 transcription factor pid=Bradi1g72330.1;tid=Bradi1g72330.1;GeneName=Bradi1g72330;Name=BdABI16;transcript=eq;prot=eq + Bd1 No
BD2G07980 bdi ABI3VP1 transcription factor pid=Bradi2g07980.1;tid=Bradi2g07980.1;GeneName=Bradi2g07980;Name=BdABI19;transcript=eq;prot=eq + Bd2 No
BD2G07987 bdi pid=Bradi2g07987.1;tid=Bradi2g07987.1;GeneName=Bradi2g07987;transcript=eq;prot=eq + Bd2 No
BD2G22130 bdi ABI3VP1 transcription factor pid=Bradi2g22130.1;tid=Bradi2g22130.1;GeneName=Bradi2g22130;Name=BdABI21;transcript=eq;prot=eq + Bd2 No
CP00002G02510 cpa name=evm.TU.supercontig_2.251;pid=evm.TU.supercontig_2.251;prot=eq;transcript=eq + supercontig_2 No
CP00055G01620 cpa name=evm.TU.supercontig_55.162;pid=evm.TU.supercontig_55.162;prot=eq;transcript=eq - supercontig_55 No
CP00062G00230 cpa name=evm.TU.supercontig_62.23;pid=evm.TU.supercontig_62.23;prot=eq;transcript=eq - supercontig_62 No
CP00062G00240 cpa name=evm.TU.supercontig_62.24;pid=evm.TU.supercontig_62.24;prot=eq;transcript=eq - supercontig_62 No
CP00062G00250 cpa name=evm.TU.supercontig_62.25;pid=evm.TU.supercontig_62.25;prot=eq;transcript=eq - supercontig_62 No
CP00062G00260 cpa name=evm.TU.supercontig_62.26;pid=evm.TU.supercontig_62.26;prot=eq;transcript=eq - supercontig_62 No
FV1G18490 fve B3 domain-containing protein Os01g0234100 (probable) transcript=eq;prot=eq;pid=gene24052 - LG1 No
FV2G34010 fve B3 domain-containing protein At5g42700 (similar to) transcript=eq;prot=eq;pid=gene09083 - LG2 No
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