Gene family 
- Id
- HOM000775
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO001077 (42 genes in 23 species)
ORTHO002094 (33 genes in 16 species)
ORTHO029775 (4 genes in 1 species)
View all sub-families (6)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (4 genes)
- ath
- Arabidopsis thaliana (4 genes)
- bdi
- Brachypodium distachyon (8 genes)
- cpa
- Carica papaya (6 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (5 genes)
- gma
- Glycine max (2 genes)
- lja
- Lotus japonicus (16 genes)
- mdo
- Malus domestica (6 genes)
- mes
- Manihot esculenta (5 genes)
- mrcc299
- Micromonas sp. RCC299 (2 genes)
- mtr
- Medicago truncatula (12 genes)
- osa
- Oryza sativa ssp. japonica (10 genes)
- osaindica
- Oryza sativa ssp. indica (5 genes)
- ota
- Ostreococcus tauri (2 genes)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (4 genes)
- rco
- Ricinus communis (6 genes)
- sbi
- Sorghum bicolor (9 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (4 genes)
- vvi
- Vitis vinifera (6 genes)
- zma
- Zea mays (20 genes)
The gene family HOM000775 has 140 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of this gene family.
- ...the expansion/depletion of species in this gene family.
View
- ...the multiple sequence alignment of the homologous gene family.
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
- ...the functional annotation associated with this gene family.
Index of genes with 1 constraints:
- gene family : HOM000775
Page 1 of 7, showing 20 records out of 140 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL0G01670 | aly | name=Al_scaffold_0009_187;pid=883705;prot=eq;tid=915218 | - | scaffold_9 | No | |
| AL2G10100 | aly | name=fgenesh2_kg.2__693__ATCG00490.1;pid=475563;prot=eq;tid=475563 | - | scaffold_2 | No | |
| AL2G10440 | aly | name=Al_scaffold_0002_979;pid=876385;prot=eq;tid=907898 | - | scaffold_2 | No | |
| AL2G10770 | aly | name=fgenesh2_kg.2__732__ATCG00490.1;pid=475602;prot=eq;tid=475602 | + | scaffold_2 | No | |
| AT2G07732 | ath | Ribulose bisphosphate carboxylase large chain, catalytic domain; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, magnesium ion binding; INVOLVED IN: carbon fixation; LOCATED IN: plastid; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, large subunit, C-terminal (InterPro:IPR000685); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase large chain, catalytic domain (TAIR:ATMG00280.1); Has 37989 Blast hits to 37988 proteins in 23191 species: Archae - 194; Bacteria - 1961; Metazoa - 0; Fungi - 0; Plants - 28440; Viruses - 0; Other Eukaryotes - 7394 (source: NCBI BLink).;Ribulose bisphosphate carboxylase large chain, catalytic domain | transcript=eq;prot=eq; | - | 2 | No |
| ATCG00490 | ath | large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.;ribulose-bisphosphate carboxylases | transcript=eq;prot=eq; | + | chloroplast | No |
| ATCG01120 | ath | encodes a chloroplast ribosomal protein S15, a constituent of the small subunit of the ribosomal complex;chloroplast ribosomal protein S15 | transcript=eq;prot=eq; | - | chloroplast | No |
| ATMG00280 | ath | hypothetical protein;Ribulose bisphosphate carboxylase large chain, catalytic domain | transcript=eq;prot=eq; | - | mitochondrial | No |
| BD2G13082 | bdi | pid=Bradi2g13082.1;tid=Bradi2g13082.1;GeneName=Bradi2g13082;transcript=eq;prot=eq | - | Bd2 | No | |
| BD2G20990 | bdi | ribulose-bisphosphate carboxylase activity (Blast2GO) | pid=Bradi2g20990.1;tid=Bradi2g20990.1;GeneName=Bradi2g20990;transcript=eq;prot=eq | + | Bd2 | No |
| BD3G27272 | bdi | pid=Bradi3g27272.1;tid=Bradi3g27272.1;GeneName=Bradi3g27272;transcript=eq;prot=eq | - | Bd3 | No | |
| BD3G27278 | bdi | pid=Bradi3g27278.1;tid=Bradi3g27278.1;GeneName=Bradi3g27278;transcript=eq;prot=eq | - | Bd3 | No | |
| BD3G27325 | bdi | pid=Bradi3g27325.1;tid=Bradi3g27325.1;GeneName=Bradi3g27325;transcript=eq;prot=eq | + | Bd3 | No | |
| BDCG00480 | bdi | rbcL;ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit;protein_id=ACF08648.1; | transl_table=11; | + | chloroplast | No |
| BDCG00970 | bdi | rps15;ribosomal protein S15;protein_id=ACF08683.1; | transl_table=11; | + | chloroplast | No |
| BDCG01090 | bdi | rps15;ribosomal protein S15;protein_id=ACF08694.1; | transl_table=11; | - | chloroplast | No |
| CP00011G01500 | cpa | name=evm.TU.supercontig_11.151;pid=evm.TU.supercontig_11.151;prot=eq;transcript=eq | - | supercontig_11 | No | |
| CP00011G01510 | cpa | name=evm.TU.supercontig_11.152;pid=evm.TU.supercontig_11.152;prot=eq;transcript=eq | - | supercontig_11 | No | |
| CP00011G01520 | cpa | name=evm.TU.supercontig_11.153;pid=evm.TU.supercontig_11.153;prot=eq;transcript=eq | - | supercontig_11 | No | |
| CP00063G00210 | cpa | name=evm.TU.supercontig_63.21;pid=evm.TU.supercontig_63.21;prot=eq;transcript=eq | + | supercontig_63 | No |