Gene family  

Sub-families
ORTHO001077 (42 genes in 23 species)
ORTHO002094 (33 genes in 16 species)
ORTHO029775 (4 genes in 1 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (16 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (12 genes)
osa
Oryza sativa ssp. japonica (10 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (9 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (4 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (20 genes)



The gene family HOM000775 has 140 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 140 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G01670 aly name=Al_scaffold_0009_187;pid=883705;prot=eq;tid=915218 - scaffold_9 No
AL2G10100 aly name=fgenesh2_kg.2__693__ATCG00490.1;pid=475563;prot=eq;tid=475563 - scaffold_2 No
AL2G10440 aly name=Al_scaffold_0002_979;pid=876385;prot=eq;tid=907898 - scaffold_2 No
AL2G10770 aly name=fgenesh2_kg.2__732__ATCG00490.1;pid=475602;prot=eq;tid=475602 + scaffold_2 No
AT2G07732 ath Ribulose bisphosphate carboxylase large chain, catalytic domain; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, magnesium ion binding; INVOLVED IN: carbon fixation; LOCATED IN: plastid; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, large subunit, C-terminal (InterPro:IPR000685); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase large chain, catalytic domain (TAIR:ATMG00280.1); Has 37989 Blast hits to 37988 proteins in 23191 species: Archae - 194; Bacteria - 1961; Metazoa - 0; Fungi - 0; Plants - 28440; Viruses - 0; Other Eukaryotes - 7394 (source: NCBI BLink).;Ribulose bisphosphate carboxylase large chain, catalytic domain transcript=eq;prot=eq; - 2 No
ATCG00490 ath large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.;ribulose-bisphosphate carboxylases transcript=eq;prot=eq; + chloroplast No
ATCG01120 ath encodes a chloroplast ribosomal protein S15, a constituent of the small subunit of the ribosomal complex;chloroplast ribosomal protein S15 transcript=eq;prot=eq; - chloroplast No
ATMG00280 ath hypothetical protein;Ribulose bisphosphate carboxylase large chain, catalytic domain transcript=eq;prot=eq; - mitochondrial No
BD2G13082 bdi pid=Bradi2g13082.1;tid=Bradi2g13082.1;GeneName=Bradi2g13082;transcript=eq;prot=eq - Bd2 No
BD2G20990 bdi ribulose-bisphosphate carboxylase activity (Blast2GO) pid=Bradi2g20990.1;tid=Bradi2g20990.1;GeneName=Bradi2g20990;transcript=eq;prot=eq + Bd2 No
BD3G27272 bdi pid=Bradi3g27272.1;tid=Bradi3g27272.1;GeneName=Bradi3g27272;transcript=eq;prot=eq - Bd3 No
BD3G27278 bdi pid=Bradi3g27278.1;tid=Bradi3g27278.1;GeneName=Bradi3g27278;transcript=eq;prot=eq - Bd3 No
BD3G27325 bdi pid=Bradi3g27325.1;tid=Bradi3g27325.1;GeneName=Bradi3g27325;transcript=eq;prot=eq + Bd3 No
BDCG00480 bdi rbcL;ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit;protein_id=ACF08648.1; transl_table=11; + chloroplast No
BDCG00970 bdi rps15;ribosomal protein S15;protein_id=ACF08683.1; transl_table=11; + chloroplast No
BDCG01090 bdi rps15;ribosomal protein S15;protein_id=ACF08694.1; transl_table=11; - chloroplast No
CP00011G01500 cpa name=evm.TU.supercontig_11.151;pid=evm.TU.supercontig_11.151;prot=eq;transcript=eq - supercontig_11 No
CP00011G01510 cpa name=evm.TU.supercontig_11.152;pid=evm.TU.supercontig_11.152;prot=eq;transcript=eq - supercontig_11 No
CP00011G01520 cpa name=evm.TU.supercontig_11.153;pid=evm.TU.supercontig_11.153;prot=eq;transcript=eq - supercontig_11 No
CP00063G00210 cpa name=evm.TU.supercontig_63.21;pid=evm.TU.supercontig_63.21;prot=eq;transcript=eq + supercontig_63 No
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