Gene family  

Sub-families
ORTHO000290 (71 genes in 22 species)
ORTHO008771 (21 genes in 16 species)
ORTHO015877 (9 genes in 9 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (9 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (21 genes)
mes
Manihot esculenta (10 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (9 genes)



The gene family HOM000774 has 140 genes in 22 species (12 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 140 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G03410 aly name=fgenesh1_pm.C_scaffold_63000001;pid=333145;prot=eq;tid=333145 - scaffold_63 No
AL2G15660 aly name=scaffold_201590.1;pid=894516;prot=eq;tid=926029 + scaffold_2 No
AL3G01310 aly name=fgenesh2_kg.3__159__AT3G02230.1;pid=477458;prot=eq;tid=477458 + scaffold_3 No
AL3G08980 aly name=fgenesh1_pm.C_scaffold_3000708;pid=317692;prot=eq;tid=317692 - scaffold_3 No
AL6G15490 aly name=fgenesh2_kg.6__1544__AT5G15650.1;pid=488410;prot=eq;tid=488410 + scaffold_6 No
AL6G16380 aly name=fgenesh2_kg.6__1640__AT5G16510.2;pid=488506;prot=eq;tid=488506 + scaffold_6 No
AL6G24660 aly name=scaffold_602557.1;pid=910500;prot=eq;tid=942013 - scaffold_6 No
AL7G11190 aly name=fgenesh2_kg.7__1147__AT4G30390.1;pid=491714;prot=eq;tid=491714 + scaffold_7 Yes
AL8G14890 aly name=scaffold_801503.1;pid=918103;prot=eq;tid=949616 + scaffold_8 No
AT3G02230 ath reversibly glycosylated polypeptide possibly involved in plant cell wall synthesis;reversibly glycosylated polypeptide 1 transcript=eq;prot=eq; + 3 No
AT3G08900 ath Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.;reversibly glycosylated polypeptide 3 transcript=eq;prot=eq; - 3 No
AT4G30390 ath unknown protein; Has 22 Blast hits to 22 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 4 Yes
AT5G15650 ath Reversibly Glycosylated Polypeptide-2. Constitutive expression in tobacco impairs plant development and virus spread.;reversibly glycosylated polypeptide 2 transcript=eq;prot=eq; + 5 No
AT5G16510 ath Alpha-1,4-glucan-protein synthase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, glycogenin glucosyltransferase activity; INVOLVED IN: response to salt stress; LOCATED IN: Golgi apparatus, cell junction, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,4-glucan-protein synthase, UDP-forming (InterPro:IPR004901); BEST Arabidopsis thaliana protein match is: reversibly glycosylated polypeptide 1 (TAIR:AT3G02230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Alpha-1,4-glucan-protein synthase family protein transcript=eq;prot=eq; + 5 No
AT5G50750 ath reversibly glycosylated polypeptide RGP-4 (RGP4);reversibly glycosylated polypeptide 4 transcript=eq;prot=eq; + 5 No
BD1G15050 bdi Similar to UDP-arabinopyranose mutase. Reversibly glycosylated polypeptide. CAZy family GT75. pid=Bradi1g15050.1;tid=Bradi1g15050.1;GeneName=Bradi1g15050;Name=BdRGP4;transcript=eq;prot=eq + Bd1 No
BD1G21990 bdi Similar to UDP-arabinopyranose mutase. Reversibly glycosylated polypeptide. CAZy family GT75. pid=Bradi1g21990.1;tid=Bradi1g21990.1;GeneName=Bradi1g21990;Name=BdRGP3;transcript=eq;prot=eq - Bd1 No
BD2G50660 bdi Similar to UDP-arabinopyranose mutase. Reversibly glycosylated polypeptide. CAZy family GT75. pid=Bradi2g50660.1;tid=Bradi2g50660.1;GeneName=Bradi2g50660;Name=BdRGP1;transcript=eq;prot=eq - Bd2 No
BD5G24850 bdi Similar to UDP-arabinopyranose mutase. Reversibly glycosylated polypeptide. CAZy family GT75. pid=Bradi5g24850.2;tid=Bradi5g24850.2;GeneName=Bradi5g24850;Name=BdRGP2;transcript=eq;prot=eq + Bd5 No
CP00001G01540 cpa name=evm.TU.supercontig_1.154;pid=evm.TU.supercontig_1.154;prot=eq;transcript=eq + supercontig_1 No
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