Gene family  

Sub-families
ORTHO001611 (37 genes in 20 species)
ORTHO003348 (29 genes in 18 species)
ORTHO008638 (21 genes in 13 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (17 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (7 genes)
mtr
Medicago truncatula (9 genes)
osa
Oryza sativa ssp. japonica (8 genes)
osaindica
Oryza sativa ssp. indica (10 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (4 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (8 genes)



The gene family HOM000772 has 140 genes in 20 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 7, showing 20 records out of 140 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G01700 aly name=fgenesh2_kg.2__139__AT1G63430.1;pid=475009;prot=eq;tid=475009 - scaffold_2 No
AL4G27050 aly name=scaffold_402810.1;pid=903309;prot=eq;tid=934822 - scaffold_4 No
AL4G27070 aly name=scaffold_402812.1;pid=903311;prot=eq;tid=934824 - scaffold_4 Yes
AL4G27100 aly name=fgenesh1_pm.C_scaffold_4001776;pid=321719;prot=eq;tid=321719 - scaffold_4 No
AL5G26250 aly name=fgenesh2_kg.5__2037__AT3G56050.2;pid=486045;prot=eq;tid=486045 - scaffold_5 No
AL6G06860 aly name=fgenesh2_kg.6__671__AT5G07150.1;pid=487537;prot=eq;tid=487537 + scaffold_6 No
AL7G24030 aly name=scaffold_702557.1;pid=914815;prot=eq;tid=946328 - scaffold_7 No
AL7G36480 aly name=scaffold_703830.1;pid=916088;prot=eq;tid=947601 - scaffold_7 No
AL8G02570 aly name=fgenesh2_kg.8__214__AT5G45840.1;pid=494398;prot=eq;tid=494398 + scaffold_8 No
AL8G24470 aly name=fgenesh2_kg.8__1791__AT5G58540.1;pid=495975;prot=eq;tid=495975 + scaffold_8 No
AT1G63430 ath Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT5G41180.1).;Leucine-rich repeat protein kinase family protein transcript=eq;prot=eq; + 1 No
AT2G40270 ath Protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT3G56050.2); Has 40621 Blast hits to 40281 proteins in 1597 species: Archae - 8; Bacteria - 2197; Metazoa - 11172; Fungi - 1041; Plants - 22757; Viruses - 129; Other Eukaryotes - 3317 (source: NCBI BLink).;Protein kinase family protein transcript=eq;prot=eq; - 2 No
AT3G56050 ath Protein kinase family protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT2G40270.1); Has 41170 Blast hits to 40839 proteins in 1653 species: Archae - 20; Bacteria - 2328; Metazoa - 11695; Fungi - 793; Plants - 23080; Viruses - 152; Other Eukaryotes - 3102 (source: NCBI BLink).;Protein kinase family protein transcript=eq;prot=eq; - 3 No
AT4G18640 ath Required for root hair elongation during tip growth.;Leucine-rich repeat protein kinase family protein transcript=eq;prot=eq; + 4 No
AT5G07150 ath Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G58540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Leucine-rich repeat protein kinase family protein transcript=eq;prot=eq; + 5 No
AT5G41180 ath leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G63430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;leucine-rich repeat transmembrane protein kinase family protein transcript=eq;prot=eq; + 5 No
AT5G45840 ath Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G18640.1).;Leucine-rich repeat protein kinase family protein transcript=eq;prot=eq; - 5 No
AT5G58540 ath Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G07150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Protein kinase superfamily protein transcript=eq;prot=eq; + 5 No
BD1G16670 bdi leucine-rich repeat protein kinase, putative, expressed, subfamily LRR-VI pid=Bradi1g16670.1;tid=Bradi1g16670.1;GeneName=Bradi1g16670;transcript=eq;prot=eq - Bd1 No
BD1G65340 bdi leucine-rich repeat protein kinase, putative, expressed, subfamily LRR-VI pid=Bradi1g65340.1;tid=Bradi1g65340.1;GeneName=Bradi1g65340;transcript=eq;prot=eq + Bd1 No
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