Gene family  

Sub-families
ORTHO000561 (54 genes in 24 species)
ORTHO008646 (21 genes in 18 species)
ORTHO015158 (10 genes in 8 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (21 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (13 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (15 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (14 genes)



The gene family HOM000770 has 141 genes in 25 species (11 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 141 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G32140 aly name=fgenesh2_kg.1__3273__ATCG00830.1;pid=473319;prot=eq;tid=473319 + scaffold_1 No
AL2G09870 aly name=Al_scaffold_0002_934;pid=876340;prot=eq;tid=907853 + scaffold_2 No
AL2G11000 aly name=fgenesh1_pm.C_scaffold_2000597;pid=315564;prot=eq;tid=315564 - scaffold_2 No
AL4G31700 aly name=fgenesh2_kg.4__2584__AT2G44065.1;pid=483524;prot=eq;tid=483524 + scaffold_4 No
AT2G44065 ath Ribosomal protein L2 family; FUNCTIONS IN: structural constituent of ribosome, RNA binding, transferase activity; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal protein L2, conserved site (InterPro:IPR022671), Translation protein SH3-like, subgroup (InterPro:IPR014722), Ribosomal protein L2, bacterial-type (InterPro:IPR005880), Ribosomal protein L2 (InterPro:IPR002171); BEST Arabidopsis thaliana protein match is: ribosomal protein L2 (TAIR:ATCG01310.1); Has 10726 Blast hits to 10726 proteins in 3680 species: Archae - 316; Bacteria - 5707; Metazoa - 478; Fungi - 286; Plants - 1243; Viruses - 0; Other Eukaryotes - 2696 (source: NCBI BLink).;Ribosomal protein L2 family transcript=eq;prot=eq; + 2 No
ATCG00830 ath encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex;ribosomal protein L2 transcript=eq;prot=eq; - chloroplast No
ATCG01310 ath encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex;ribosomal protein L2 transcript=eq;prot=eq; + chloroplast No
BD1G05800 bdi pid=Bradi1g05800.1;tid=Bradi1g05800.1;GeneName=Bradi1g05800;transcript=eq;prot=eq + Bd1 No
BD3G18424 bdi pid=Bradi3g18424.1;tid=Bradi3g18424.1;GeneName=Bradi3g18424;transcript=eq;prot=eq - Bd3 No
BD5G05662 bdi pid=Bradi5g05662.1;tid=Bradi5g05662.1;GeneName=Bradi5g05662;transcript=eq;prot=eq + Bd5 No
BDCG00820 bdi rpl2;ribosomal protein L2;protein_id=ACF08679.1; transl_table=11; - chloroplast No
BDCG01240 bdi rpl2;ribosomal protein L2;protein_id=ACF08698.1; transl_table=11; + chloroplast No
CP00588G00030 cpa name=evm.TU.supercontig_588.3;pid=evm.TU.supercontig_588.3;prot=eq;transcript=eq - supercontig_588 No
CPCG00840 cpa rpl2;ribosomal protein L2;protein_id=ABY86824.1; transl_table=11; - chloroplast No
CPCG01280 cpa rpl2;ribosomal protein L2;protein_id=ABY86845.1; transl_table=11; + chloroplast No
CR07G07560 cre name=e_gwW.16.163.1;pid=116036;prot=eq;tid=116036;transcript=eq - chromosome_7 No
CRCG00210 cre rpl2;ribosomal protein L2;protein_id=DAA00915.1; transl_table=11; + chloroplast No
FV0G53730 fve 50S ribosomal protein L2, chloroplastic (similar to) transcript=eq;prot=eq;pid=gene32768 - scf0510714 No
FV0G59230 fve 50S ribosomal protein L2, chloroplastic (similar to) transcript=eq;prot=eq;pid=gene32734 + scf0510653 No
FV0G60870 fve 50S ribosomal protein L2, chloroplastic (similar to) transcript=eq;prot=eq;pid=gene32864 + scf0510977 No
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