Gene family  

Sub-families
ORTHO001047 (43 genes in 20 species)
ORTHO008683 (21 genes in 18 species)
ORTHO014921 (11 genes in 7 species)
View all sub-families (14)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (26 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (14 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (18 genes)
rco
Ricinus communis (10 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (6 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (4 genes)



The gene family HOM000752 has 145 genes in 20 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 145 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G10470 aly name=fgenesh2_kg.5__754__AT3G42630.1;pid=484762;prot=eq;tid=484762 + scaffold_5 No
AL7G17930 aly name=scaffold_701910.1;pid=914168;prot=eq;tid=945681 - scaffold_7 No
AL7G30280 aly name=fgenesh2_kg.7__2924__AT4G14190.1;pid=493491;prot=eq;tid=493491 + scaffold_7 No
AL8G24710 aly name=fgenesh2_kg.8__1816__AT5G58750.1;pid=496000;prot=eq;tid=496000 + scaffold_8 No
AT3G42630 ath Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G14190.1); Has 5690 Blast hits to 3414 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 5631; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).;Pentatricopeptide repeat (PPR) superfamily protein transcript=eq;prot=eq; + 3 No
AT4G14190 ath Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G42630.1); Has 17113 Blast hits to 6259 proteins in 178 species: Archae - 1; Bacteria - 6; Metazoa - 71; Fungi - 33; Plants - 16698; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).;Pentatricopeptide repeat (PPR) superfamily protein transcript=eq;prot=eq; - 4 No
AT4G24220 ath encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding.;NAD(P)-binding Rossmann-fold superfamily protein transcript=eq;prot=eq; + 4 No
AT5G58750 ath NAD(P)-binding Rossmann-fold superfamily protein; BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G24220.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;NAD(P)-binding Rossmann-fold superfamily protein transcript=eq;prot=eq; + 5 No
BD1G16000 bdi pid=Bradi1g16000.1;tid=Bradi1g16000.1;GeneName=Bradi1g16000;transcript=eq;prot=eq - Bd1 No
BD3G40470 bdi pid=Bradi3g40470.1;tid=Bradi3g40470.1;GeneName=Bradi3g40470;transcript=eq;prot=eq + Bd3 No
CP00021G01190 cpa name=evm.TU.supercontig_21.119;pid=evm.TU.supercontig_21.119;prot=eq;transcript=eq - supercontig_21 No
CP00112G00250 cpa name=evm.TU.supercontig_112.25;pid=evm.TU.supercontig_112.25;prot=eq;transcript=eq + supercontig_112 No
CP00115G00250 cpa name=evm.TU.supercontig_115.25;pid=evm.TU.supercontig_115.25;prot=eq;transcript=eq - supercontig_115 No
CP01071G00010 cpa name=evm.TU.supercontig_1071.1;pid=evm.TU.supercontig_1071.1;prot=eq;transcript=eq + supercontig_1071 No
FV2G03540 fve hypothetical protein transcript=eq;prot=eq;pid=gene22746 - LG2 No
FV3G22390 fve hypothetical protein transcript=eq;prot=eq;pid=gene07893 - LG3 No
FV5G22140 fve Pentatricopeptide repeat-containing protein At3g42630 (similar to) transcript=eq;prot=eq;pid=gene12214 - LG5 No
FV5G41060 fve hypothetical protein transcript=eq;prot=eq;pid=gene10933 + LG5 No
GM01G32790 gma 01 pid=16244984;transcript=eq;prot=eq;name=Glyma01g32790.1 - Gm01 No
GM03G04350 gma 03 pid=16251086;transcript=eq;prot=eq;name=Glyma03g04350.1 - Gm03 No
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