Gene family  

Sub-families
ORTHO002004 (34 genes in 24 species)
ORTHO004989 (26 genes in 24 species)
ORTHO005044 (26 genes in 22 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (17 genes)
lja
Lotus japonicus (16 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (8 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (9 genes)



The gene family HOM000738 has 146 genes in 25 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 146 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G01270 aly name=fgenesh2_kg.3__153__AT3G02190.1;pid=477452;prot=eq;tid=477452 - scaffold_3 No
AL3G12380 aly name=scaffold_301372.1;pid=897402;prot=eq;tid=928915 - scaffold_3 No
AL3G40830 aly name=Al_scaffold_0003_3939;pid=875298;prot=eq;tid=906811 - scaffold_3 No
AL4G06240 aly name=scaffold_400639.1;pid=901138;prot=eq;tid=932651 + scaffold_4 No
AL7G09540 aly name=scaffold_701000.1;pid=913258;prot=eq;tid=944771 - scaffold_7 No
AT2G18950 ath Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading.;homogentisate phytyltransferase 1 transcript=eq;prot=eq; + 2 No
AT2G25210 ath Ribosomal protein L39 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e, conserved site (InterPro:IPR020083), Ribosomal protein L39e (InterPro:IPR000077); BEST Arabidopsis thaliana protein match is: Ribosomal protein L39 family protein (TAIR:AT4G31985.1); Has 908 Blast hits to 908 proteins in 288 species: Archae - 195; Bacteria - 0; Metazoa - 389; Fungi - 107; Plants - 121; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).;Ribosomal protein L39 family protein transcript=eq;prot=eq; + 2 No
AT3G02190 ath Ribosomal protein L39 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e, conserved site (InterPro:IPR020083), Ribosomal protein L39e (InterPro:IPR000077); BEST Arabidopsis thaliana protein match is: Ribosomal protein L39 family protein (TAIR:AT4G31985.1); Has 957 Blast hits to 957 proteins in 304 species: Archae - 223; Bacteria - 0; Metazoa - 399; Fungi - 107; Plants - 121; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).;Ribosomal protein L39 family protein transcript=eq;prot=eq; - 3 No
AT3G11945 ath Encodes a protein involved in plastoquinone-9 biosynthesis. The enzyme possesses homogentisate prenyltransferase activity and was shown to use solanesyl diphosphate, farnesyl diphosphate and geranylgeranyldiphosphate as prenyl donors, but not phytyldiphosphate. This gene At3g11945 derives from a split of At3g11950, publications Tian et al (2007) and Sadre et al (2006) refer to this gene as At3g11950.;homogentisate prenyltransferase transcript=eq;prot=eq; - 3 No
AT4G31985 ath Ribosomal protein L39 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L39e, conserved site (InterPro:IPR020083), Ribosomal protein L39e (InterPro:IPR000077); BEST Arabidopsis thaliana protein match is: Ribosomal protein L39 family protein (TAIR:AT3G02190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ribosomal protein L39 family protein transcript=eq;prot=eq; + 4 No
BD0G00090 bdi pid=Bradi0007s00220.2;tid=Bradi0007s00220.2;GeneName=Bradi0007s00220;transcript=eq;prot=eq + scaffold_7 No
BD1G31380 bdi pid=Bradi1g31380.1;tid=Bradi1g31380.1;GeneName=Bradi1g31380;transcript=eq;prot=eq + Bd1 No
BD1G47500 bdi pid=Bradi1g47500.1;tid=Bradi1g47500.1;GeneName=Bradi1g47500;transcript=eq;prot=eq + Bd1 No
BD2G18210 bdi pid=Bradi2g18210.3;tid=Bradi2g18210.3;GeneName=Bradi2g18210;transcript=eq;prot=eq - Bd2 No
BD3G19677 bdi pid=Bradi3g19677.1;tid=Bradi3g19677.1;GeneName=Bradi3g19677;transcript=eq;prot=eq + Bd3 Yes
BD3G54170 bdi pid=Bradi3g54170.1;tid=Bradi3g54170.1;GeneName=Bradi3g54170;transcript=eq;prot=eq + Bd3 No
CP00005G02840 cpa name=evm.TU.supercontig_5.284;pid=evm.TU.supercontig_5.284;prot=eq;transcript=eq - supercontig_5 No
CP00085G00110 cpa name=evm.TU.supercontig_85.11;pid=evm.TU.supercontig_85.11;prot=eq;transcript=eq + supercontig_85 No
CP00095G00460 cpa name=evm.TU.supercontig_95.46;pid=evm.TU.supercontig_95.46;prot=eq;transcript=eq - supercontig_95 No
CP00532G00040 cpa name=evm.TU.supercontig_532.4;pid=evm.TU.supercontig_532.4;prot=eq;transcript=eq + supercontig_532 No
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