Gene family  

Sub-families
ORTHO004387 (27 genes in 19 species)
ORTHO006058 (25 genes in 18 species)
ORTHO010833 (18 genes in 12 species)
View all sub-families (13)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (5 genes)
fve
Fragaria vesca (9 genes)
gma
Glycine max (19 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (13 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (17 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (6 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (8 genes)



The gene family HOM000736 has 146 genes in 20 species (10 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 146 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G25720 aly name=fgenesh2_kg.3__2527__AT3G23160.1;pid=479826;prot=eq;tid=479826 - scaffold_3 No
AL6G03920 aly name=scaffold_600400.1;pid=908343;prot=eq;tid=939856 - scaffold_6 No
AL8G15870 aly name=Al_scaffold_0008_1535;pid=885271;prot=eq;tid=916784 + scaffold_8 No
AT3G23160 ath Protein of unknown function (DUF668); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT5G04550.1); Has 431 Blast hits to 290 proteins in 19 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 424; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;Protein of unknown function (DUF668) transcript=eq;prot=eq; - 3 No
AT5G04550 ath Protein of unknown function (DUF668); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT3G23160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Protein of unknown function (DUF668) transcript=eq;prot=eq; - 5 No
AT5G51670 ath Protein of unknown function (DUF668); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT5G04550.1); Has 324 Blast hits to 279 proteins in 20 species: Archae - 0; Bacteria - 1; Metazoa - 2; Fungi - 0; Plants - 319; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;Protein of unknown function (DUF668) transcript=eq;prot=eq; + 5 No
BD1G00840 bdi pid=Bradi1g00840.1;tid=Bradi1g00840.1;GeneName=Bradi1g00840;transcript=eq;prot=eq + Bd1 No
BD1G66860 bdi pid=Bradi1g66860.1;tid=Bradi1g66860.1;GeneName=Bradi1g66860;transcript=eq;prot=eq + Bd1 No
BD2G54800 bdi pid=Bradi2g54800.1;tid=Bradi2g54800.1;GeneName=Bradi2g54800;transcript=eq;prot=eq - Bd2 No
BD4G27180 bdi pid=Bradi4g27180.1;tid=Bradi4g27180.1;GeneName=Bradi4g27180;transcript=eq;prot=eq - Bd4 Yes
BD4G42760 bdi pid=Bradi4g42760.1;tid=Bradi4g42760.1;GeneName=Bradi4g42760;transcript=eq;prot=eq + Bd4 No
BD5G00710 bdi pid=Bradi5g00710.1;tid=Bradi5g00710.1;GeneName=Bradi5g00710;transcript=eq;prot=eq - Bd5 No
CP00003G02660 cpa name=evm.TU.supercontig_3.266;pid=evm.TU.supercontig_3.266;prot=eq;transcript=eq - supercontig_3 No
CP00005G00910 cpa name=evm.TU.supercontig_5.91;pid=evm.TU.supercontig_5.91;prot=eq;transcript=eq + supercontig_5 No
CP00044G00870 cpa name=evm.TU.supercontig_44.87;pid=evm.TU.supercontig_44.87;prot=eq;transcript=eq + supercontig_44 No
CP00228G00040 cpa name=evm.TU.supercontig_228.4;pid=evm.TU.supercontig_228.4;prot=eq;transcript=eq - supercontig_228 No
CP00942G00020 cpa name=evm.TU.supercontig_942.2;pid=evm.TU.supercontig_942.2;prot=eq;transcript=eq - supercontig_942 No
FV3G14270 fve Lysyl-tRNA synthetase (LysRS) (probable) transcript=eq;prot=eq;pid=gene29684 - LG3 No
FV4G06940 fve Probable ubiquitin fusion degradation protein C12B10.01c transcript=eq;prot=eq;pid=gene01760 - LG4 No
FV6G19470 fve hypothetical protein transcript=eq;prot=eq;pid=gene30114 + LG6 No
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