Gene family  

Sub-families
ORTHO000421 (60 genes in 24 species)
ORTHO002899 (30 genes in 24 species)
ORTHO003421 (29 genes in 23 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (9 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (15 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (6 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (8 genes)
osaindica
Oryza sativa ssp. indica (9 genes)
ota
Ostreococcus tauri (4 genes)
ppa
Physcomitrella patens (9 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (9 genes)



The gene family HOM000734 has 146 genes in 25 species (8 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 146 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G00770 aly name=fgenesh1_pg.C_scaffold_9000065;pid=359025;prot=eq;tid=359025 - scaffold_9 No
AL1G05760 aly name=fgenesh2_kg.1__596__AT5G25230.1;pid=470642;prot=eq;tid=470642 + scaffold_1 No
AL1G50900 aly name=scaffold_105425.1;pid=892631;prot=eq;tid=924144 - scaffold_1 No
AL3G13350 aly name=fgenesh1_pm.C_scaffold_3001076;pid=318060;prot=eq;tid=318060 + scaffold_3 No
AL3G25360 aly name=scaffold_302755.1;pid=898785;prot=eq;tid=930298 - scaffold_3 No
AT1G06220 ath Encodes a protein with similarity to splicing factor Snu114. Snu114 is thought to be involved in activation of the splicosome. Loss of GFA1 function results in reduced female fertility. Approximately 50% of ovules abort due to defects in the female gametophyte. In mutant gametophytes antipodal cells express egg cell markers suggesting a defect in specification of cell fate.GFA1 is also required to restrict the expression of LIS.;Ribosomal protein S5/Elongation factor G/III/V family protein transcript=eq;prot=eq; + 1 No
AT1G56070 ath encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive.;Ribosomal protein S5/Elongation factor G/III/V family protein transcript=eq;prot=eq; - 1 No
AT3G12915 ath Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1); Has 62937 Blast hits to 55974 proteins in 4670 species: Archae - 1189; Bacteria - 40681; Metazoa - 3235; Fungi - 1899; Plants - 1092; Viruses - 1; Other Eukaryotes - 14840 (source: NCBI BLink).;Ribosomal protein S5/Elongation factor G/III/V family protein transcript=ne;prot=eq; + 3 No
AT3G22980 ath Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G56070.1); Has 75542 Blast hits to 60298 proteins in 6538 species: Archae - 1481; Bacteria - 47710; Metazoa - 4520; Fungi - 3401; Plants - 1472; Viruses - 1; Other Eukaryotes - 16957 (source: NCBI BLink).;Ribosomal protein S5/Elongation factor G/III/V family protein transcript=eq;prot=eq; - 3 No
AT5G25230 ath Ribosomal protein S5/Elongation factor G/III/V family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation factor EFG/EF2, domain IV (InterPro:IPR005517), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5/Elongation factor G/III/V family protein (TAIR:AT1G06220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Ribosomal protein S5/Elongation factor G/III/V family protein transcript=eq;prot=eq; + 5 No
BD1G13520 bdi GTPase activity (Blast2GO) pid=Bradi1g13520.1;tid=Bradi1g13520.1;GeneName=Bradi1g13520;transcript=eq;prot=eq - Bd1 No
BD1G36340 bdi GTPase activity (Blast2GO) pid=Bradi1g36340.1;tid=Bradi1g36340.1;GeneName=Bradi1g36340;transcript=eq;prot=eq + Bd1 No
BD2G30160 bdi GTP binding (Blast2GO) pid=Bradi2g30160.1;tid=Bradi2g30160.1;GeneName=Bradi2g30160;transcript=eq;prot=eq - Bd2 No
BD2G45070 bdi GTPase activity (Blast2GO) pid=Bradi2g45070.1;tid=Bradi2g45070.1;GeneName=Bradi2g45070;transcript=eq;prot=eq + Bd2 No
BD2G62580 bdi GTPase activity (Blast2GO) pid=Bradi2g62580.1;tid=Bradi2g62580.1;GeneName=Bradi2g62580;transcript=eq;prot=eq + Bd2 No
BD3G44160 bdi GTPase activity (Blast2GO) pid=Bradi3g44160.1;tid=Bradi3g44160.1;GeneName=Bradi3g44160;transcript=eq;prot=eq + Bd3 No
BD3G44480 bdi GTPase activity (Blast2GO) pid=Bradi3g44480.1;tid=Bradi3g44480.1;GeneName=Bradi3g44480;transcript=eq;prot=eq - Bd3 No
CP00007G00800 cpa name=evm.TU.supercontig_7.80;pid=evm.TU.supercontig_7.80;prot=eq;transcript=eq - supercontig_7 No
CP00103G00420 cpa name=evm.TU.supercontig_103.42;pid=evm.TU.supercontig_103.42;prot=eq;transcript=eq - supercontig_103 No
CP00103G00430 cpa name=evm.TU.supercontig_103.43;pid=evm.TU.supercontig_103.43;prot=eq;transcript=eq - supercontig_103 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier