Gene family  

Sub-families
ORTHO004641 (27 genes in 18 species)
ORTHO010012 (19 genes in 14 species)
ORTHO011678 (17 genes in 11 species)
View all sub-families (17)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (20 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (13 genes)
mes
Manihot esculenta (8 genes)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (8 genes)
tca
Theobroma cacao (5 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (12 genes)



The gene family HOM000725 has 148 genes in 18 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 148 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G46800 aly name=fgenesh1_pm.C_scaffold_1003326;pid=314546;prot=eq;tid=314546 + scaffold_1 No
AL3G17610 aly name=fgenesh2_kg.3__1811__AT3G16490.1;pid=479110;prot=eq;tid=479110 - scaffold_3 No
AL5G18510 aly name=fgenesh1_pm.C_scaffold_5001065;pid=323521;prot=eq;tid=323521 - scaffold_5 No
AL5G21040 aly name=fgenesh1_pm.C_scaffold_5001240;pid=323696;prot=eq;tid=323696 - scaffold_5 No
AL6G06990 aly name=scaffold_600726.1;pid=908669;prot=eq;tid=940182 + scaffold_6 No
AL7G12590 aly name=fgenesh2_kg.7__1276__AT4G29150.1;pid=491843;prot=eq;tid=491843 - scaffold_7 No
AL7G29330 aly name=fgenesh2_kg.7__2855__AT4G14750.1;pid=493422;prot=eq;tid=493422 - scaffold_7 No
AL8G28360 aly name=fgenesh2_kg.8__2197__AT5G62070.1;pid=496381;prot=eq;tid=496381 - scaffold_8 No
AT1G51960 ath IQ-domain 27 (IQD27); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 26 (TAIR:AT3G16490.1); Has 770 Blast hits to 761 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 754; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;IQ-domain 27 transcript=eq;prot=eq; + 1 No
AT3G16490 ath IQ-domain 26 (IQD26); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 27 (TAIR:AT1G51960.1); Has 778 Blast hits to 763 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 10; Plants - 755; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).;IQ-domain 26 transcript=eq;prot=eq; - 3 No
AT3G49380 ath IQ-domain 15 (iqd15); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 16 (TAIR:AT4G10640.1); Has 694 Blast hits to 691 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 692; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;IQ-domain 15 transcript=eq;prot=eq; - 3 No
AT3G51380 ath IQ-domain 20 (IQD20); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 21 (TAIR:AT3G49260.3); Has 730 Blast hits to 729 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 3; Plants - 702; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;IQ-domain 20 transcript=eq;prot=eq; - 3 No
AT4G14750 ath IQ-domain 19 (IQD19); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 26 (TAIR:AT3G16490.1); Has 2338 Blast hits to 1945 proteins in 201 species: Archae - 4; Bacteria - 168; Metazoa - 612; Fungi - 134; Plants - 1079; Viruses - 66; Other Eukaryotes - 275 (source: NCBI BLink).;IQ-domain 19 transcript=eq;prot=eq; + 4 No
AT4G29150 ath IQ-domain 25 (IQD25); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 26 (TAIR:AT3G16490.1); Has 784 Blast hits to 779 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 2; Plants - 731; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).;IQ-domain 25 transcript=eq;prot=eq; + 4 No
AT5G07240 ath IQ-domain 24 (IQD24); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 23 (TAIR:AT5G62070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;IQ-domain 24 transcript=eq;prot=eq; + 5 No
AT5G62070 ath IQ-domain 23 (IQD23); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 24 (TAIR:AT5G07240.1); Has 854 Blast hits to 833 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 7; Plants - 775; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).;IQ-domain 23 transcript=eq;prot=eq; - 5 No
BD1G14090 bdi pid=Bradi1g14090.1;tid=Bradi1g14090.1;GeneName=Bradi1g14090;transcript=eq;prot=eq - Bd1 No
BD1G74410 bdi pid=Bradi1g74410.1;tid=Bradi1g74410.1;GeneName=Bradi1g74410;transcript=eq;prot=eq + Bd1 No
BD2G05680 bdi pid=Bradi2g05680.1;tid=Bradi2g05680.1;GeneName=Bradi2g05680;transcript=eq;prot=eq + Bd2 No
BD2G19410 bdi motor activity, ATPase activity (Blast2GO) pid=Bradi2g19410.1;tid=Bradi2g19410.1;GeneName=Bradi2g19410;transcript=eq;prot=eq + Bd2 No
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