Gene family  

Sub-families
ORTHO003162 (30 genes in 24 species)
ORTHO005308 (26 genes in 21 species)
ORTHO008549 (21 genes in 20 species)
View all sub-families (13)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (12 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (7 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (4 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (9 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (5 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (4 genes)



The gene family HOM000710 has 151 genes in 25 species (8 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 151 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G36450 aly name=scaffold_103907.1;pid=891113;prot=eq;tid=922626 - scaffold_1 No
AL3G27860 aly name=fgenesh2_kg.3__2659__AT3G24495.1;pid=479958;prot=eq;tid=479958 - scaffold_3 No
AL5G17820 aly name=fgenesh2_kg.5__1234__AT3G48880.2;pid=485242;prot=eq;tid=485242 + scaffold_5 No
AL6G23530 aly name=fgenesh1_pm.C_scaffold_6001886;pid=326666;prot=eq;tid=326666 + scaffold_6 No
AL6G34390 aly name=Al_scaffold_0006_3332;pid=863823;prot=eq;tid=895336 - scaffold_6 No
AL6G34400 aly name=fgenesh1_pg.C_scaffold_6002821;pid=352228;prot=eq;tid=352228 - scaffold_6 No
AL6G34410 aly name=fgenesh1_pg.C_scaffold_6002822;pid=352229;prot=eq;tid=352229 - scaffold_6 No
AL6G34420 aly name=scaffold_603560.1;pid=911503;prot=eq;tid=943016 - scaffold_6 No
AL6G34440 aly name=scaffold_603562.1;pid=911505;prot=eq;tid=943018 - scaffold_6 No
AL6G39420 aly name=scaffold_604079.1;pid=912022;prot=eq;tid=943535 - scaffold_6 No
AL7G16610 aly name=fgenesh2_kg.7__1706__AT4G25540.1;pid=492273;prot=eq;tid=492273 + scaffold_7 No
AT3G24495 ath encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2*MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts.;MUTS homolog 7 transcript=eq;prot=eq; - 3 No
AT3G48880 ath RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G11580.1); Has 401 Blast hits to 392 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 0; Plants - 349; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;RNI-like superfamily protein transcript=eq;prot=eq; + 3 No
AT4G02070 ath encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.;MUTS homolog 6 transcript=eq;prot=eq; + 4 No
AT4G11580 ath RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT3G48880.2); Has 189 Blast hits to 187 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;RNI-like superfamily protein transcript=eq;prot=eq; - 4 No
AT4G25540 ath encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).;homolog of DNA mismatch repair protein MSH3 transcript=eq;prot=eq; - 4 No
BD2G05160 bdi dinucleotide insertion or deletion binding, single base insertion or deletion binding (Blast2GO) pid=Bradi2g05160.1;tid=Bradi2g05160.1;GeneName=Bradi2g05160;transcript=eq;prot=eq - Bd2 No
BD3G30187 bdi pid=Bradi3g30187.1;tid=Bradi3g30187.1;GeneName=Bradi3g30187;transcript=eq;prot=eq - Bd3 No
BD4G29887 bdi pid=Bradi4g29887.1;tid=Bradi4g29887.1;GeneName=Bradi4g29887;transcript=eq;prot=eq + Bd4 No
BD5G26812 bdi pid=Bradi5g26812.1;tid=Bradi5g26812.1;GeneName=Bradi5g26812;transcript=eq;prot=eq + Bd5 No
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