Gene family  

Sub-families
ORTHO004706 (27 genes in 16 species)
ORTHO007165 (23 genes in 17 species)
ORTHO010151 (19 genes in 12 species)
View all sub-families (17)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (9 genes)
fve
Fragaria vesca (14 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (9 genes)
mtr
Medicago truncatula (11 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (5 genes)
tca
Theobroma cacao (11 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (10 genes)



The gene family HOM000707 has 151 genes in 19 species (16 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 151 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G39060 aly name=scaffold_304147.1;pid=900177;prot=eq;tid=931690 + scaffold_3 No
AL3G40510 aly name=fgenesh1_pm.C_scaffold_3002861;pid=319845;prot=eq;tid=319845 - scaffold_3 No
AL3G40520 aly name=fgenesh1_pm.C_scaffold_3002862;pid=319846;prot=eq;tid=319846 - scaffold_3 No
AL3G40530 aly name=fgenesh2_kg.3__3513__AT2G16485.1;pid=480812;prot=eq;tid=480812 - scaffold_3 Yes
AL5G20770 aly name=scaffold_502165.1;pid=906461;prot=eq;tid=937974 - scaffold_5 No
AL6G08210 aly name=fgenesh2_kg.6__814__AT5G08430.1;pid=487680;prot=eq;tid=487680 + scaffold_6 No
AL6G23290 aly name=fgenesh1_pg.C_scaffold_6001961;pid=351368;prot=eq;tid=351368 + scaffold_6 No
AL8G30310 aly name=fgenesh1_pm.C_scaffold_8001936;pid=332593;prot=eq;tid=332593 - scaffold_8 No
AT2G16485 ath nucleic acid binding;zinc ion binding;DNA binding; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Plus-3 domain, subgroup (InterPro:IPR018144), Zinc finger, PHD-type (InterPro:IPR001965), GYF (InterPro:IPR003169), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), SWIB domain (InterPro:IPR019835), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (TAIR:AT3G51120.1); Has 38357 Blast hits to 25980 proteins in 1833 species: Archae - 670; Bacteria - 4778; Metazoa - 14464; Fungi - 4561; Plants - 3104; Viruses - 298; Other Eukaryotes - 10482 (source: NCBI BLink).;nucleic acid binding;zinc ion binding;DNA binding transcript=eq;prot=eq; - 2 No
AT2G18090 ath PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), SWIB/MDM2 domain (InterPro:IPR003121), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), GYF (InterPro:IPR003169), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (TAIR:AT3G51120.1); Has 1270 Blast hits to 1121 proteins in 190 species: Archae - 0; Bacteria - 166; Metazoa - 513; Fungi - 60; Plants - 433; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).;PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein transcript=eq;prot=eq; + 2 No
AT3G51120 ath DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Plus-3 domain, subgroup (InterPro:IPR018144), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), GYF (InterPro:IPR003169), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), SWIB domain (InterPro:IPR019835), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: nucleic acid binding;zinc ion binding;DNA binding (TAIR:AT2G16485.1); Has 2327 Blast hits to 1758 proteins in 258 species: Archae - 0; Bacteria - 308; Metazoa - 909; Fungi - 193; Plants - 493; Viruses - 18; Other Eukaryotes - 406 (source: NCBI BLink).;DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding transcript=eq;prot=eq; - 3 No
AT5G08430 ath SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G23480.1); Has 361 Blast hits to 341 proteins in 67 species: Archae - 0; Bacteria - 4; Metazoa - 120; Fungi - 28; Plants - 189; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).;SWIB/MDM2 domain;Plus-3;GYF transcript=eq;prot=eq; + 5 No
AT5G23480 ath SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G08430.1); Has 628 Blast hits to 541 proteins in 110 species: Archae - 0; Bacteria - 43; Metazoa - 166; Fungi - 57; Plants - 154; Viruses - 1; Other Eukaryotes - 207 (source: NCBI BLink).;SWIB/MDM2 domain;Plus-3;GYF transcript=ne;prot=eq; + 5 No
AT5G63700 ath zinc ion binding;DNA binding; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Zinc finger, PHD-type (InterPro:IPR001965), Plus-3 (InterPro:IPR004343), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G08430.1); Has 1143 Blast hits to 955 proteins in 114 species: Archae - 0; Bacteria - 2; Metazoa - 778; Fungi - 27; Plants - 204; Viruses - 3; Other Eukaryotes - 129 (source: NCBI BLink).;zinc ion binding;DNA binding transcript=eq;prot=eq; - 5 No
BD1G77760 bdi histone lysine N-methyltransferase activity (H4-K20 specific), histone lysine N-methyltransferase activity (H3-K36 specific) (Blast2GO) pid=Bradi1g77760.1;tid=Bradi1g77760.1;GeneName=Bradi1g77760;transcript=eq;prot=eq - Bd1 No
BD2G25017 bdi pid=Bradi2g25017.3;tid=Bradi2g25017.3;GeneName=Bradi2g25017;transcript=eq;prot=eq - Bd2 No
BD2G57107 bdi pid=Bradi2g57107.1;tid=Bradi2g57107.1;GeneName=Bradi2g57107;transcript=eq;prot=eq - Bd2 No
BD3G30620 bdi histone-lysine N-methyltransferase activity (Blast2GO) pid=Bradi3g30620.1;tid=Bradi3g30620.1;GeneName=Bradi3g30620;transcript=eq;prot=eq - Bd3 No
BD4G35977 bdi pid=Bradi4g35977.1;tid=Bradi4g35977.1;GeneName=Bradi4g35977;transcript=eq;prot=eq + Bd4 No
CP00006G02080 cpa name=evm.TU.supercontig_6.209;pid=evm.TU.supercontig_6.209;prot=eq;transcript=eq - supercontig_6 No
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