Gene family  

Sub-families
ORTHO000592 (53 genes in 20 species)
ORTHO009452 (20 genes in 19 species)
ORTHO048043 (2 genes in 2 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (7 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (16 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (12 genes)
mes
Manihot esculenta (7 genes)
mtr
Medicago truncatula (8 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (10 genes)
ptr
Populus trichocarpa (9 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (5 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (11 genes)



The gene family HOM000699 has 153 genes in 21 species (8 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 153 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G07990 aly name=scaffold_300893.1;pid=896923;prot=eq;tid=928436 + scaffold_3 No
AL4G06680 aly name=fgenesh2_kg.4__460__AT2G25490.1;pid=481400;prot=eq;tid=481400 - scaffold_4 No
AL5G29120 aly name=fgenesh2_kg.5__2297__AT3G58530.1;pid=486305;prot=eq;tid=486305 + scaffold_5 No
AL6G23150 aly name=scaffold_602403.1;pid=910346;prot=eq;tid=941859 + scaffold_6 No
AL6G25490 aly name=fgenesh2_kg.6__2520__AT5G25350.1;pid=489386;prot=eq;tid=489386 - scaffold_6 No
AL7G28290 aly name=fgenesh2_kg.7__2776__AT4G15475.1;pid=493343;prot=eq;tid=493343 - scaffold_7 No
AT2G25490 ath Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3.;EIN3-binding F box protein 1 transcript=eq;prot=eq; - 2 No
AT3G07550 ath RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G23340.1); Has 6516 Blast hits to 2862 proteins in 227 species: Archae - 0; Bacteria - 210; Metazoa - 2727; Fungi - 707; Plants - 2248; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).;RNI-like superfamily protein transcript=eq;prot=eq; + 3 No
AT3G58530 ath RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G23340.1); Has 9313 Blast hits to 3891 proteins in 246 species: Archae - 0; Bacteria - 470; Metazoa - 3686; Fungi - 1044; Plants - 3046; Viruses - 9; Other Eukaryotes - 1058 (source: NCBI BLink).;RNI-like superfamily protein transcript=eq;prot=eq; + 3 No
AT4G15475 ath F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 2 (TAIR:AT5G25350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;F-box/RNI-like superfamily protein transcript=eq;prot=eq; + 4 No
AT5G23340 ath RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G15475.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RNI-like superfamily protein transcript=eq;prot=eq; + 5 No
AT5G25350 ath Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway.;EIN3-binding F box protein 2 transcript=eq;prot=eq; - 5 No
BD1G36530 bdi F-Box pid=Bradi1g36530.1;tid=Bradi1g36530.1;GeneName=Bradi1g36530;transcript=eq;prot=eq - Bd1 No
BD3G07397 bdi pid=Bradi3g07397.1;tid=Bradi3g07397.1;GeneName=Bradi3g07397;transcript=eq;prot=eq - Bd3 No
BD3G10360 bdi ubiquitin-protein ligase activity (Blast2GO) pid=Bradi3g10360.1;tid=Bradi3g10360.1;GeneName=Bradi3g10360;transcript=eq;prot=eq + Bd3 No
BD3G49687 bdi pid=Bradi3g49687.1;tid=Bradi3g49687.1;GeneName=Bradi3g49687;transcript=eq;prot=eq - Bd3 No
BD4G11900 bdi ubiquitin-protein ligase activity (Blast2GO) pid=Bradi4g11900.1;tid=Bradi4g11900.1;GeneName=Bradi4g11900;transcript=eq;prot=eq - Bd4 No
BD4G20740 bdi F-Box pid=Bradi4g20740.2;tid=Bradi4g20740.2;GeneName=Bradi4g20740;transcript=eq;prot=eq - Bd4 No
CP00046G00080 cpa name=evm.TU.supercontig_46.8;pid=evm.TU.supercontig_46.8;prot=eq;transcript=eq + supercontig_46 No
CP00060G00850 cpa name=evm.TU.supercontig_60.85;pid=evm.TU.supercontig_60.85;prot=eq;transcript=eq + supercontig_60 No
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