Gene family  

Sub-families
ORTHO001789 (35 genes in 18 species)
ORTHO002499 (32 genes in 24 species)
ORTHO013801 (13 genes in 11 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (12 genes)
gma
Glycine max (14 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (14 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (10 genes)
ptr
Populus trichocarpa (14 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (12 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (6 genes)



The gene family HOM000685 has 155 genes in 25 species (20 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 155 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G33890 aly name=fgenesh2_kg.1__3403__AT1G32583.1;pid=473449;prot=eq;tid=473449 + scaffold_1 No
AL5G17670 aly name=scaffold_501829.1;pid=906125;prot=eq;tid=937638 + scaffold_5 No
AL7G17160 aly name=scaffold_701829.1;pid=914087;prot=eq;tid=945600 - scaffold_7 No
AL8G30140 aly name=fgenesh2_kg.8__2362__AT5G63570.1;pid=496546;prot=eq;tid=496546 + scaffold_8 No
AT1G32583 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). transcript=eq;prot=eq; + 1 No
AT3G48730 ath glutamate-1-semialdehyde 2,1-aminomutase 2 (GSA2); FUNCTIONS IN: glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase (InterPro:IPR004639), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate-1-semialdehyde-2,1-aminomutase (TAIR:AT5G63570.1); Has 34778 Blast hits to 34772 proteins in 2825 species: Archae - 734; Bacteria - 23568; Metazoa - 533; Fungi - 800; Plants - 388; Viruses - 10; Other Eukaryotes - 8745 (source: NCBI BLink).;glutamate-1-semialdehyde 2,1-aminomutase 2 transcript=eq;prot=eq; + 3 No
AT4G24972 ath Encodes a novel small protein which is similar to proteins of unknown function from other plant species. TPD1 is involved in cell specification during anther and pollen development. Identified in a screen for male steriles. Mutants lack tapetal cells and have an increased number of microsporocytes. Expressed in flower buds, leaves and young seedlings. In anthers, TPD1 is expressed throughout pollen development in parietal cells and sporocytes. Physically interacts with the LRR kinase EMS1 and that interaction results in phosphorylation of TPD1.;tapetum determinant 1 transcript=eq;prot=eq; + 4 No
AT5G63570 ath Encodes a protein with homology to glutamate-1-semialdehyde 2,1-aminomutase catalyzing the conversion of glutamate-1-semialdehyde (GSA) into 5-amino levulinate. The expression of this gene was demonstrated to be light-induced.;glutamate-1-semialdehyde-2,1-aminomutase transcript=eq;prot=eq; + 5 No
BD3G41270 bdi glutamate-1-semialdehyde 2,1-aminomutase activity, 4-aminobutyrate transaminase activity (Blast2GO) pid=Bradi3g41270.1;tid=Bradi3g41270.1;GeneName=Bradi3g41270;transcript=eq;prot=eq + Bd3 No
BD4G07590 bdi pid=Bradi4g07590.1;tid=Bradi4g07590.1;GeneName=Bradi4g07590;transcript=eq;prot=eq - Bd4 No
BD4G22190 bdi pid=Bradi4g22190.1;tid=Bradi4g22190.1;GeneName=Bradi4g22190;transcript=eq;prot=eq + Bd4 No
BD4G22200 bdi pid=Bradi4g22200.1;tid=Bradi4g22200.1;GeneName=Bradi4g22200;transcript=eq;prot=eq + Bd4 No
CP00004G01440 cpa name=evm.TU.supercontig_4.144;pid=evm.TU.supercontig_4.144;prot=eq;transcript=eq - supercontig_4 No
CP00004G01450 cpa name=evm.TU.supercontig_4.145;pid=evm.TU.supercontig_4.145;prot=eq;transcript=eq - supercontig_4 No
CP00009G00560 cpa name=evm.TU.supercontig_9.56;pid=evm.TU.supercontig_9.56;prot=eq;transcript=eq - supercontig_9 No
CR03G02230 cre name=estExt_gwp_1W.C_340068;pid=138524;prot=eq;tid=138524;transcript=eq + chromosome_3 No
FV0G09390 fve Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic (GSA), Precursor (similar to) transcript=eq;prot=eq;pid=gene06466 - scf0513158 No
FV0G14520 fve Endonuclease (probable) transcript=eq;prot=eq;pid=gene06915 - scf0513160 No
FV0G29750 fve Copia protease (probable) transcript=eq;prot=eq;pid=gene13740 - scf0513178 No
FV0G45730 fve MATH and LRR domain-containing protein PFE0570w (probable) transcript=eq;prot=eq;pid=gene34319 + scf0513090 No
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