Gene family  

Sub-families
ORTHO000713 (49 genes in 22 species)
ORTHO006007 (25 genes in 19 species)
ORTHO009987 (19 genes in 18 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (38 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (6 genes)



The gene family HOM000682 has 155 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 155 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G36190 aly name=scaffold_103875.1;pid=891081;prot=eq;tid=922594 - scaffold_1 No
AL3G02610 aly name=scaffold_300298.1;pid=896328;prot=eq;tid=927841 - scaffold_3 No
AL4G30930 aly name=scaffold_403234.1;pid=903733;prot=eq;tid=935246 - scaffold_4 No
AL5G30060 aly name=fgenesh2_kg.5__2413__AT3G59540.1;pid=486421;prot=eq;tid=486421 - scaffold_5 No
AL6G37440 aly name=scaffold_603869.1;pid=911812;prot=eq;tid=943325 + scaffold_6 No
AL7G22700 aly name=fgenesh2_kg.7__2317__AT4G19860.1;pid=492884;prot=eq;tid=492884 + scaffold_7 No
AT1G31190 ath Encodes a myo-inositol monophosphatase IMPL1 (myo-Inositol monophosphatase like 1).;myo-inositol monophosphatase like 1 transcript=eq;prot=eq; + 1 No
AT2G43460 ath Ribosomal L38e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L38e (InterPro:IPR002675); BEST Arabidopsis thaliana protein match is: Ribosomal L38e protein family (TAIR:AT3G59540.1); Has 621 Blast hits to 621 proteins in 253 species: Archae - 3; Bacteria - 0; Metazoa - 265; Fungi - 127; Plants - 120; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).;Ribosomal L38e protein family transcript=eq;prot=eq; - 2 No
AT3G03310 ath lecithin:cholesterol acyltransferase 3 (LCAT3); FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G19860.1); Has 560 Blast hits to 555 proteins in 155 species: Archae - 2; Bacteria - 82; Metazoa - 189; Fungi - 22; Plants - 147; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).;lecithin:cholesterol acyltransferase 3 transcript=eq;prot=eq; - 3 No
AT3G59540 ath Ribosomal L38e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L38e (InterPro:IPR002675); BEST Arabidopsis thaliana protein match is: Ribosomal L38e protein family (TAIR:AT2G43460.1); Has 621 Blast hits to 621 proteins in 253 species: Archae - 3; Bacteria - 0; Metazoa - 265; Fungi - 127; Plants - 120; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink).;Ribosomal L38e protein family transcript=eq;prot=eq; - 3 No
AT4G19860 ath alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); BEST Arabidopsis thaliana protein match is: lecithin:cholesterol acyltransferase 3 (TAIR:AT3G03310.1); Has 596 Blast hits to 589 proteins in 168 species: Archae - 2; Bacteria - 89; Metazoa - 166; Fungi - 41; Plants - 181; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).;alpha/beta-Hydrolases superfamily protein transcript=eq;prot=eq; - 4 No
BD1G25302 bdi pid=Bradi1g25302.1;tid=Bradi1g25302.1;GeneName=Bradi1g25302;transcript=eq;prot=eq + Bd1 No
BD3G05226 bdi pid=Bradi3g05226.1;tid=Bradi3g05226.1;GeneName=Bradi3g05226;transcript=eq;prot=eq + Bd3 No
BD3G41835 bdi pid=Bradi3g41835.1;tid=Bradi3g41835.1;GeneName=Bradi3g41835;transcript=eq;prot=eq - Bd3 No
BD4G35000 bdi phosphatidylcholine-sterol O-acyltransferase activity (Blast2GO) pid=Bradi4g35000.1;tid=Bradi4g35000.1;GeneName=Bradi4g35000;transcript=eq;prot=eq + Bd4 No
BD5G21757 bdi pid=Bradi5g21757.1;tid=Bradi5g21757.1;GeneName=Bradi5g21757;transcript=eq;prot=eq + Bd5 No
CP00009G03110 cpa name=evm.TU.supercontig_9.311;pid=evm.TU.supercontig_9.311;prot=eq;transcript=eq - supercontig_9 No
CP00135G00190 cpa name=evm.TU.supercontig_135.19;pid=evm.TU.supercontig_135.19;prot=eq;transcript=eq + supercontig_135 No
CP00135G00200 cpa name=evm.TU.supercontig_135.20;pid=evm.TU.supercontig_135.20;prot=eq;transcript=eq + supercontig_135 No
CP00135G00240 cpa name=evm.TU.supercontig_135.24;pid=evm.TU.supercontig_135.24;prot=eq;transcript=eq + supercontig_135 No
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