Gene family  

Sub-families
ORTHO002070 (34 genes in 20 species)
ORTHO004127 (28 genes in 24 species)
ORTHO007110 (23 genes in 18 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (8 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (6 genes)
gma
Glycine max (16 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (12 genes)
mes
Manihot esculenta (10 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (13 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (8 genes)



The gene family HOM000675 has 157 genes in 25 species (33 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 157 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G14350 aly name=fgenesh2_kg.1__1480__AT1G13635.1;pid=471526;prot=eq;tid=471526 + scaffold_1 No
AL1G16860 aly name=fgenesh2_kg.1__1750__AT1G15970.1;pid=471796;prot=eq;tid=471796 - scaffold_1 No
AL2G28940 aly name=fgenesh2_kg.2__2290__AT1G80850.1;pid=477160;prot=eq;tid=477160 + scaffold_2 No
AL3G13150 aly name=fgenesh2_kg.3__1334__AT3G12710.1;pid=478633;prot=eq;tid=478633 - scaffold_3 No
AL8G04700 aly name=scaffold_800511.1;pid=917111;prot=eq;tid=948624 + scaffold_8 No
AL8G23760 aly name=fgenesh1_pg.C_scaffold_8001796;pid=358009;prot=eq;tid=358009 + scaffold_8 Yes
AL8G23780 aly name=fgenesh2_kg.8__1716__AT5G57970.2;pid=495900;prot=eq;tid=495900 + scaffold_8 No
AT1G13635 ath DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT5G57970.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;DNA glycosylase superfamily protein transcript=eq;prot=eq; + 1 No
AT1G15970 ath DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G80850.1); Has 3684 Blast hits to 3684 proteins in 1581 species: Archae - 10; Bacteria - 3170; Metazoa - 10; Fungi - 2; Plants - 164; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).;DNA glycosylase superfamily protein transcript=eq;prot=eq; - 1 No
AT1G75090 ath DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT5G57970.2); Has 3694 Blast hits to 3694 proteins in 1578 species: Archae - 10; Bacteria - 3185; Metazoa - 5; Fungi - 2; Plants - 164; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).;DNA glycosylase superfamily protein transcript=eq;prot=eq; - 1 No
AT1G80850 ath DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G15970.1); Has 3667 Blast hits to 3667 proteins in 1573 species: Archae - 10; Bacteria - 3168; Metazoa - 4; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).;DNA glycosylase superfamily protein transcript=eq;prot=eq; - 1 No
AT3G12710 ath DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT5G44680.1); Has 3673 Blast hits to 3673 proteins in 1573 species: Archae - 10; Bacteria - 3171; Metazoa - 4; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 322 (source: NCBI BLink).;DNA glycosylase superfamily protein transcript=eq;prot=eq; - 3 No
AT5G44680 ath DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT3G12710.1); Has 3656 Blast hits to 3656 proteins in 1559 species: Archae - 10; Bacteria - 3140; Metazoa - 4; Fungi - 4; Plants - 168; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink).;DNA glycosylase superfamily protein transcript=eq;prot=eq; - 5 No
AT5G57950 ath 26S proteasome regulatory subunit, putative; CONTAINS InterPro DOMAIN/s: PDZ/DHR/GLGF (InterPro:IPR001478); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;26S proteasome regulatory subunit, putative transcript=eq;prot=eq; + 5 Yes
AT5G57970 ath DNA glycosylase superfamily protein; FUNCTIONS IN: DNA-3-methyladenine glycosylase I activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), Methyladenine glycosylase (InterPro:IPR005019); BEST Arabidopsis thaliana protein match is: DNA glycosylase superfamily protein (TAIR:AT1G80850.1); Has 3809 Blast hits to 3727 proteins in 1589 species: Archae - 10; Bacteria - 3189; Metazoa - 57; Fungi - 9; Plants - 164; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink).;DNA glycosylase superfamily protein transcript=eq;prot=eq; + 5 No
BD1G30920 bdi DNA-3-methyladenine glycosylase I activity (Blast2GO) pid=Bradi1g30920.1;tid=Bradi1g30920.1;GeneName=Bradi1g30920;transcript=eq;prot=eq - Bd1 No
BD1G71270 bdi DNA-3-methyladenine glycosylase I activity (Blast2GO) pid=Bradi1g71270.1;tid=Bradi1g71270.1;GeneName=Bradi1g71270;transcript=eq;prot=eq + Bd1 No
BD2G52460 bdi DNA-3-methyladenine glycosylase I activity (Blast2GO) pid=Bradi2g52460.1;tid=Bradi2g52460.1;GeneName=Bradi2g52460;transcript=eq;prot=eq + Bd2 No
BD3G38950 bdi DNA-3-methyladenine glycosylase I activity (Blast2GO) pid=Bradi3g38950.1;tid=Bradi3g38950.1;GeneName=Bradi3g38950;transcript=eq;prot=eq + Bd3 No
BD4G30437 bdi pid=Bradi4g30437.1;tid=Bradi4g30437.1;GeneName=Bradi4g30437;transcript=eq;prot=eq - Bd4 No
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