Gene family  

Sub-families
ORTHO003372 (29 genes in 19 species)
ORTHO008696 (21 genes in 16 species)
ORTHO010985 (18 genes in 16 species)
View all sub-families (15)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (9 genes)
gma
Glycine max (16 genes)
lja
Lotus japonicus (8 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (8 genes)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (15 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (9 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (13 genes)



The gene family HOM000674 has 157 genes in 22 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 157 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G00820 aly name=fgenesh2_kg.3__101__AT3G01280.1;pid=477400;prot=eq;tid=477400 - scaffold_3 No
AL5G19330 aly name=fgenesh1_pm.C_scaffold_5001114;pid=323570;prot=eq;tid=323570 - scaffold_5 No
AL6G14910 aly name=fgenesh2_kg.6__1484__AT5G15090.1;pid=488350;prot=eq;tid=488350 - scaffold_6 No
AL8G23210 aly name=fgenesh2_kg.8__1664__AT5G57490.1;pid=495848;prot=eq;tid=495848 - scaffold_8 No
AL8G32950 aly name=fgenesh2_kg.8__2661__AT5G67500.1;pid=496845;prot=eq;tid=496845 - scaffold_8 No
AT3G01280 ath Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.;voltage dependent anion channel 1 transcript=eq;prot=eq; + 3 No
AT3G49920 ath Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.;voltage dependent anion channel 5 transcript=eq;prot=eq; - 3 No
AT5G15090 ath Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.;voltage dependent anion channel 3 transcript=eq;prot=eq; - 5 No
AT5G37610 ath Eukaryotic porin family protein; FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: anion transport, transmembrane transport; LOCATED IN: mitochondrial outer membrane, endomembrane system; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 1 (TAIR:AT3G01280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Eukaryotic porin family protein transcript=eq;prot=eq; + 5 No
AT5G57490 ath Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.;voltage dependent anion channel 4 transcript=eq;prot=eq; - 5 No
AT5G67500 ath Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.;voltage dependent anion channel 2 transcript=eq;prot=eq; + 5 No
BD1G71020 bdi voltage-gated anion channel activity (Blast2GO) pid=Bradi1g71020.1;tid=Bradi1g71020.1;GeneName=Bradi1g71020;transcript=eq;prot=eq + Bd1 No
BD1G75910 bdi voltage-gated anion channel activity (Blast2GO) pid=Bradi1g75910.1;tid=Bradi1g75910.1;GeneName=Bradi1g75910;transcript=eq;prot=eq - Bd1 No
BD2G18610 bdi voltage-gated anion channel activity (Blast2GO) pid=Bradi2g18610.1;tid=Bradi2g18610.1;GeneName=Bradi2g18610;transcript=eq;prot=eq - Bd2 No
BD2G18630 bdi voltage-gated anion channel activity (Blast2GO) pid=Bradi2g18630.1;tid=Bradi2g18630.1;GeneName=Bradi2g18630;transcript=eq;prot=eq - Bd2 No
BD2G42137 bdi pid=Bradi2g42137.1;tid=Bradi2g42137.1;GeneName=Bradi2g42137;transcript=eq;prot=eq - Bd2 No
BD2G48160 bdi voltage-gated anion channel activity (Blast2GO) pid=Bradi2g48160.1;tid=Bradi2g48160.1;GeneName=Bradi2g48160;transcript=eq;prot=eq - Bd2 No
BD4G28660 bdi voltage-gated anion channel activity (Blast2GO) pid=Bradi4g28660.1;tid=Bradi4g28660.1;GeneName=Bradi4g28660;transcript=eq;prot=eq + Bd4 No
CP00005G02620 cpa name=evm.TU.supercontig_5.262;pid=evm.TU.supercontig_5.262;prot=eq;transcript=eq + supercontig_5 No
CP00006G00230 cpa name=evm.TU.supercontig_6.23;pid=evm.TU.supercontig_6.23;prot=eq;transcript=eq - supercontig_6 No
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