Gene family 
- Id
- HOM000670
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO000965 (44 genes in 24 species)
ORTHO005141 (26 genes in 23 species)
ORTHO006092 (25 genes in 17 species)
View all sub-families (10)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (6 genes)
- ath
- Arabidopsis thaliana (7 genes)
- bdi
- Brachypodium distachyon (5 genes)
- cpa
- Carica papaya (6 genes)
- cre
- Chlamydomonas reinhardtii (6 genes)
- fve
- Fragaria vesca (4 genes)
- gma
- Glycine max (10 genes)
- lja
- Lotus japonicus (4 genes)
- mdo
- Malus domestica (21 genes)
- mes
- Manihot esculenta (3 genes)
- mrcc299
- Micromonas sp. RCC299 (4 genes)
- mtr
- Medicago truncatula (10 genes)
- olu
- Ostreococcus lucimarinus (4 genes)
- osa
- Oryza sativa ssp. japonica (10 genes)
- osaindica
- Oryza sativa ssp. indica (13 genes)
- ota
- Ostreococcus tauri (3 genes)
- ppa
- Physcomitrella patens (3 genes)
- ptr
- Populus trichocarpa (5 genes)
- rco
- Ricinus communis (3 genes)
- sbi
- Sorghum bicolor (6 genes)
- smo
- Selaginella moellendorffii (3 genes)
- tca
- Theobroma cacao (4 genes)
- vca
- Volvox carteri (6 genes)
- vvi
- Vitis vinifera (5 genes)
- zma
- Zea mays (6 genes)
The gene family HOM000670 has 157 genes in 25 species (15 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM000670
Page 1 of 8, showing 20 records out of 157 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL5G01970 | aly | name=scaffold_500215.1;pid=904511;prot=eq;tid=936024 | - | scaffold_5 | No | |
| AL5G12480 | aly | name=fgenesh1_pg.C_scaffold_5000937;pid=347545;prot=eq;tid=347545 | - | scaffold_5 | No | |
| AL5G17090 | aly | name=Al_scaffold_0005_1636;pid=866157;prot=eq;tid=897670 | - | scaffold_5 | No | |
| AL7G00030 | aly | name=fgenesh1_pm.C_scaffold_7000002;pid=327775;prot=eq;tid=327775 | - | scaffold_7 | No | |
| AL7G31570 | aly | name=scaffold_703337.1;pid=915595;prot=eq;tid=947108 | + | scaffold_7 | No | |
| AL8G29690 | aly | name=fgenesh2_kg.8__2309__AT5G63110.1;pid=496493;prot=eq;tid=496493 | - | scaffold_8 | No | |
| AT3G44490 | ath | histone deacetylase 17 (hda17); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 9 (TAIR:AT3G44680.1); Has 1333 Blast hits to 1333 proteins in 312 species: Archae - 0; Bacteria - 0; Metazoa - 601; Fungi - 334; Plants - 208; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).;histone deacetylase 17 | transcript=eq;prot=eq; | + | 3 | No |
| AT3G44660 | ath | histone deacetylase 10 (hda10); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 17 (TAIR:AT3G44490.1); Has 1208 Blast hits to 1208 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 326; Plants - 192; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).;histone deacetylase 10 | transcript=eq;prot=eq; | - | 3 | No |
| AT3G44680 | ath | Class I RPD3 type protein;histone deacetylase 9 | transcript=eq;prot=eq; | - | 3 | No |
| AT3G44690 | ath | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | transcript=eq;prot=eq; | - | 3 | Yes |
| AT4G38130 | ath | Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.;histone deacetylase 1 | transcript=eq;prot=eq; | - | 4 | No |
| AT5G35600 | ath | histone deacetylase7 (HDA7); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;histone deacetylase7 | transcript=eq;prot=eq; | - | 5 | No |
| AT5G63110 | ath | RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.;histone deacetylase 6 | transcript=eq;prot=eq; | - | 5 | No |
| BD1G37290 | bdi | histone lysine N-methyltransferase activity (H3-K9 specific), histone lysine N-methyltransferase activity (H3-K27 specific) (Blast2GO) | pid=Bradi1g37290.1;tid=Bradi1g37290.1;GeneName=Bradi1g37290;transcript=eq;prot=eq | + | Bd1 | No |
| BD3G08060 | bdi | histone lysine N-methyltransferase activity (H3-K9 specific), histone lysine N-methyltransferase activity (H3-K27 specific) (Blast2GO) | pid=Bradi3g08060.1;tid=Bradi3g08060.1;GeneName=Bradi3g08060;transcript=eq;prot=eq | + | Bd3 | No |
| BD3G22370 | bdi | histone lysine N-methyltransferase activity (H3-K9 specific), histone lysine N-methyltransferase activity (H3-K27 specific) (Blast2GO) | pid=Bradi3g22370.1;tid=Bradi3g22370.1;GeneName=Bradi3g22370;transcript=eq;prot=eq | - | Bd3 | No |
| BD3G44780 | bdi | histone lysine N-methyltransferase activity (H3-K9 specific), histone lysine N-methyltransferase activity (H3-K27 specific) (Blast2GO) | pid=Bradi3g44780.1;tid=Bradi3g44780.1;GeneName=Bradi3g44780;transcript=eq;prot=eq | - | Bd3 | No |
| BD5G09190 | bdi | histone lysine N-methyltransferase activity (H3-K9 specific), histone lysine N-methyltransferase activity (H3-K27 specific) (Blast2GO) | pid=Bradi5g09190.1;tid=Bradi5g09190.1;GeneName=Bradi5g09190;transcript=eq;prot=eq | + | Bd5 | No |
| CP00031G00040 | cpa | name=evm.TU.supercontig_31.4;pid=evm.TU.supercontig_31.4;prot=eq;transcript=eq | + | supercontig_31 | Yes | |
| CP00031G00810 | cpa | name=evm.TU.supercontig_31.81;pid=evm.TU.supercontig_31.81;prot=eq;transcript=eq | - | supercontig_31 | No |