Gene family  

Sub-families
ORTHO000965 (44 genes in 24 species)
ORTHO005141 (26 genes in 23 species)
ORTHO006092 (25 genes in 17 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (6 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (21 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (10 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (10 genes)
osaindica
Oryza sativa ssp. indica (13 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (6 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (6 genes)



The gene family HOM000670 has 157 genes in 25 species (15 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 157 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G01970 aly name=scaffold_500215.1;pid=904511;prot=eq;tid=936024 - scaffold_5 No
AL5G12480 aly name=fgenesh1_pg.C_scaffold_5000937;pid=347545;prot=eq;tid=347545 - scaffold_5 No
AL5G17090 aly name=Al_scaffold_0005_1636;pid=866157;prot=eq;tid=897670 - scaffold_5 No
AL7G00030 aly name=fgenesh1_pm.C_scaffold_7000002;pid=327775;prot=eq;tid=327775 - scaffold_7 No
AL7G31570 aly name=scaffold_703337.1;pid=915595;prot=eq;tid=947108 + scaffold_7 No
AL8G29690 aly name=fgenesh2_kg.8__2309__AT5G63110.1;pid=496493;prot=eq;tid=496493 - scaffold_8 No
AT3G44490 ath histone deacetylase 17 (hda17); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 9 (TAIR:AT3G44680.1); Has 1333 Blast hits to 1333 proteins in 312 species: Archae - 0; Bacteria - 0; Metazoa - 601; Fungi - 334; Plants - 208; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).;histone deacetylase 17 transcript=eq;prot=eq; + 3 No
AT3G44660 ath histone deacetylase 10 (hda10); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 17 (TAIR:AT3G44490.1); Has 1208 Blast hits to 1208 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 326; Plants - 192; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).;histone deacetylase 10 transcript=eq;prot=eq; - 3 No
AT3G44680 ath Class I RPD3 type protein;histone deacetylase 9 transcript=eq;prot=eq; - 3 No
AT3G44690 ath unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; - 3 Yes
AT4G38130 ath Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.;histone deacetylase 1 transcript=eq;prot=eq; - 4 No
AT5G35600 ath histone deacetylase7 (HDA7); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;histone deacetylase7 transcript=eq;prot=eq; - 5 No
AT5G63110 ath RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.;histone deacetylase 6 transcript=eq;prot=eq; - 5 No
BD1G37290 bdi histone lysine N-methyltransferase activity (H3-K9 specific), histone lysine N-methyltransferase activity (H3-K27 specific) (Blast2GO) pid=Bradi1g37290.1;tid=Bradi1g37290.1;GeneName=Bradi1g37290;transcript=eq;prot=eq + Bd1 No
BD3G08060 bdi histone lysine N-methyltransferase activity (H3-K9 specific), histone lysine N-methyltransferase activity (H3-K27 specific) (Blast2GO) pid=Bradi3g08060.1;tid=Bradi3g08060.1;GeneName=Bradi3g08060;transcript=eq;prot=eq + Bd3 No
BD3G22370 bdi histone lysine N-methyltransferase activity (H3-K9 specific), histone lysine N-methyltransferase activity (H3-K27 specific) (Blast2GO) pid=Bradi3g22370.1;tid=Bradi3g22370.1;GeneName=Bradi3g22370;transcript=eq;prot=eq - Bd3 No
BD3G44780 bdi histone lysine N-methyltransferase activity (H3-K9 specific), histone lysine N-methyltransferase activity (H3-K27 specific) (Blast2GO) pid=Bradi3g44780.1;tid=Bradi3g44780.1;GeneName=Bradi3g44780;transcript=eq;prot=eq - Bd3 No
BD5G09190 bdi histone lysine N-methyltransferase activity (H3-K9 specific), histone lysine N-methyltransferase activity (H3-K27 specific) (Blast2GO) pid=Bradi5g09190.1;tid=Bradi5g09190.1;GeneName=Bradi5g09190;transcript=eq;prot=eq + Bd5 No
CP00031G00040 cpa name=evm.TU.supercontig_31.4;pid=evm.TU.supercontig_31.4;prot=eq;transcript=eq + supercontig_31 Yes
CP00031G00810 cpa name=evm.TU.supercontig_31.81;pid=evm.TU.supercontig_31.81;prot=eq;transcript=eq - supercontig_31 No
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