Gene family  

Sub-families
ORTHO000138 (96 genes in 24 species)
ORTHO017518 (7 genes in 2 species)
ORTHO051636 (2 genes in 1 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (15 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (13 genes)
mdo
Malus domestica (36 genes)
mes
Manihot esculenta (8 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (17 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (11 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (2 genes)



The gene family HOM000661 has 158 genes in 24 species (6 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 158 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G07140 aly name=fgenesh2_kg.2__519__AT1G58440.1;pid=475389;prot=eq;tid=475389 + scaffold_2 No
AL4G02310 aly name=Al_scaffold_0004_231;pid=868068;prot=eq;tid=899581 - scaffold_4 No
AL6G24030 aly name=fgenesh1_pm.C_scaffold_6001921;pid=326701;prot=eq;tid=326701 - scaffold_6 No
AL6G24040 aly name=Al_scaffold_0006_2299;pid=862790;prot=eq;tid=894303 - scaffold_6 No
AL6G24050 aly name=scaffold_602495.1;pid=910438;prot=eq;tid=941951 - scaffold_6 No
AL6G24060 aly name=Al_scaffold_0006_2302;pid=862793;prot=eq;tid=894306 - scaffold_6 No
AL7G02850 aly name=fgenesh2_kg.7__273__AT4G37760.1;pid=490840;prot=eq;tid=490840 - scaffold_7 No
AT1G58440 ath Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity.;FAD/NAD(P)-binding oxidoreductase family protein transcript=eq;prot=eq; - 1 No
AT2G22830 ath squalene epoxidase 2 (SQE2); FUNCTIONS IN: squalene monooxygenase activity, electron carrier activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: squalene epoxidase 3 (TAIR:AT4G37760.1); Has 2838 Blast hits to 2834 proteins in 830 species: Archae - 46; Bacteria - 1617; Metazoa - 134; Fungi - 223; Plants - 197; Viruses - 0; Other Eukaryotes - 621 (source: NCBI BLink).;squalene epoxidase 2 transcript=eq;prot=eq; - 2 No
AT4G37760 ath squalene epoxidase 3 (SQE3); FUNCTIONS IN: squalene monooxygenase activity; INVOLVED IN: response to jasmonic acid stimulus, response to wounding, sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (InterPro:IPR003953); BEST Arabidopsis thaliana protein match is: squalene epoxidase 2 (TAIR:AT2G22830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;squalene epoxidase 3 transcript=eq;prot=eq; + 4 No
AT5G24140 ath Encodes a protein with similarity to squalene monoxygenases.;squalene monooxygenase 2 transcript=eq;prot=eq; - 5 No
AT5G24150 ath squalene monooxygenase gene homolog;FAD/NAD(P)-binding oxidoreductase family protein transcript=eq;prot=eq; - 5 No
AT5G24155 ath FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: squalene monoxygenase 6 (TAIR:AT5G24160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;FAD/NAD(P)-binding oxidoreductase family protein transcript=eq;prot=eq; - 5 No
AT5G24160 ath squalene monoxygenase 6 (SQE6); FUNCTIONS IN: squalene monooxygenase activity, oxidoreductase activity, FAD binding; INVOLVED IN: sterol biosynthetic process; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Squalene epoxidase (InterPro:IPR013698), FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT5G24150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;squalene monoxygenase 6 transcript=eq;prot=eq; - 5 No
BD1G69170 bdi FAD binding (Blast2GO) pid=Bradi1g69170.1;tid=Bradi1g69170.1;GeneName=Bradi1g69170;transcript=eq;prot=eq - Bd1 No
CP00129G00670 cpa name=evm.TU.supercontig_129.67;pid=evm.TU.supercontig_129.67;prot=eq;transcript=eq - supercontig_129 No
CP00160G00270 cpa name=evm.TU.supercontig_160.27;pid=evm.TU.supercontig_160.27;prot=eq;transcript=eq - supercontig_160 No
CR15G02260 cre name=estExt_fgenesh1_pm.C_chromosome_150063;pid=381157;prot=eq;tid=381164;transcript=eq + chromosome_15 No
FV0G20040 fve Squalene monooxygenase (SE) (similar to) transcript=eq;prot=eq;pid=gene05647 + scf0513160 No
FV0G22440 fve Squalene monooxygenase (SE) (putative) transcript=eq;prot=eq;pid=gene16270 - scf0513168 No
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