Gene family  

Sub-families
ORTHO000539 (55 genes in 24 species)
ORTHO008539 (21 genes in 18 species)
ORTHO020074 (6 genes in 5 species)
View all sub-families (15)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (9 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (9 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (12 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (8 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (6 genes)
osa
Oryza sativa ssp. japonica (9 genes)
osaindica
Oryza sativa ssp. indica (10 genes)
ota
Ostreococcus tauri (7 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (8 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (7 genes)



The gene family HOM000656 has 159 genes in 25 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 159 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G41830 aly name=fgenesh1_pm.C_scaffold_1003038;pid=314258;prot=eq;tid=314258 + scaffold_1 No
AL1G48850 aly name=Al_scaffold_0001_4813;pid=883046;prot=eq;tid=914559 + scaffold_1 No
AL3G15290 aly name=scaffold_301684.1;pid=897714;prot=eq;tid=929227 - scaffold_3 No
AL3G18790 aly name=fgenesh2_kg.3__1920__AT3G17430.1;pid=479219;prot=eq;tid=479219 + scaffold_3 No
AL3G29090 aly name=scaffold_303116.1;pid=899146;prot=eq;tid=930659 - scaffold_3 No
AL4G06720 aly name=scaffold_400691.1;pid=901190;prot=eq;tid=932703 + scaffold_4 No
AL6G11020 aly name=scaffold_601142.1;pid=909085;prot=eq;tid=940598 + scaffold_6 No
AL6G25520 aly name=scaffold_602647.1;pid=910590;prot=eq;tid=942103 - scaffold_6 No
AL7G09080 aly name=scaffold_700951.1;pid=913209;prot=eq;tid=944722 - scaffold_7 No
AT1G48230 ath nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT3G17430.1); Has 2334 Blast hits to 2327 proteins in 246 species: Archae - 0; Bacteria - 20; Metazoa - 455; Fungi - 393; Plants - 1228; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink).;nodulin MtN21 /EamA-like transporter family protein transcript=eq;prot=eq; + 1 No
AT1G53660 ath nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT3G14410.1); Has 2431 Blast hits to 2424 proteins in 266 species: Archae - 2; Bacteria - 61; Metazoa - 541; Fungi - 378; Plants - 1216; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).;nodulin MtN21 /EamA-like transporter family protein transcript=eq;prot=eq; + 1 No
AT2G25520 ath Drug/metabolite transporter superfamily protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT4G32390.1); Has 2445 Blast hits to 2439 proteins in 251 species: Archae - 0; Bacteria - 11; Metazoa - 512; Fungi - 442; Plants - 1237; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).;Drug/metabolite transporter superfamily protein transcript=eq;prot=eq; + 2 No
AT3G14410 ath Nucleotide/sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G53660.1); Has 2316 Blast hits to 2309 proteins in 275 species: Archae - 4; Bacteria - 65; Metazoa - 512; Fungi - 392; Plants - 1095; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).;Nucleotide/sugar transporter family protein transcript=eq;prot=eq; - 3 No
AT3G17430 ath Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G48230.1); Has 2225 Blast hits to 2218 proteins in 235 species: Archae - 0; Bacteria - 16; Metazoa - 439; Fungi - 391; Plants - 1151; Viruses - 0; Other Eukaryotes - 228 (source: NCBI BLink).;Nucleotide-sugar transporter family protein transcript=eq;prot=eq; + 3 No
AT4G32390 ath Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Drug/metabolite transporter superfamily protein (TAIR:AT2G25520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Nucleotide-sugar transporter family protein transcript=eq;prot=eq; + 4 No
AT5G11230 ath Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G25400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Nucleotide-sugar transporter family protein transcript=eq;prot=eq; + 5 No
AT5G25400 ath Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G11230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Nucleotide-sugar transporter family protein transcript=eq;prot=eq; + 5 No
BD1G10870 bdi pyrimidine nucleotide sugar transmembrane transporter activity (Blast2GO) pid=Bradi1g10870.1;tid=Bradi1g10870.1;GeneName=Bradi1g10870;transcript=eq;prot=eq + Bd1 No
BD2G21250 bdi nucleotide-sugar transmembrane transporter activity (Blast2GO) pid=Bradi2g21250.1;tid=Bradi2g21250.1;GeneName=Bradi2g21250;transcript=eq;prot=eq - Bd2 No
BD2G52660 bdi pyrimidine nucleotide sugar transmembrane transporter activity (Blast2GO) pid=Bradi2g52660.1;tid=Bradi2g52660.1;GeneName=Bradi2g52660;transcript=eq;prot=eq - Bd2 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier