Gene family  

Sub-families
ORTHO003079 (30 genes in 22 species)
ORTHO003893 (28 genes in 23 species)
ORTHO006199 (24 genes in 21 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (13 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (13 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (8 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (5 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (12 genes)



The gene family HOM000654 has 159 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 159 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G05180 aly name=fgenesh2_kg.1__518__AT1G05620.1;pid=470564;prot=eq;tid=470564 + scaffold_1 No
AL3G20630 aly name=Al_scaffold_0003_2012;pid=873371;prot=eq;tid=904884 + scaffold_3 No
AL4G21730 aly name=fgenesh2_kg.4__1665__AT2G36310.1;pid=482605;prot=eq;tid=482605 - scaffold_4 No
AL4G31610 aly name=fgenesh1_pm.C_scaffold_4002119;pid=322062;prot=eq;tid=322062 - scaffold_4 No
AL5G30460 aly name=scaffold_503210.1;pid=907506;prot=eq;tid=939019 - scaffold_5 No
AL8G02020 aly name=Al_scaffold_0008_201;pid=883937;prot=eq;tid=915450 - scaffold_8 No
AT1G05620 ath uridine-ribohydrolase 2 (URH2); CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 1 (TAIR:AT2G36310.1); Has 6369 Blast hits to 6297 proteins in 1349 species: Archae - 75; Bacteria - 4652; Metazoa - 179; Fungi - 246; Plants - 186; Viruses - 0; Other Eukaryotes - 1031 (source: NCBI BLink).;uridine-ribohydrolase 2 transcript=eq;prot=eq; + 1 No
AT2G36310 ath uridine-ribohydrolase 1 (URH1); CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase 2 (TAIR:AT1G05620.1); Has 6361 Blast hits to 6297 proteins in 1364 species: Archae - 75; Bacteria - 4675; Metazoa - 179; Fungi - 233; Plants - 187; Viruses - 0; Other Eukaryotes - 1012 (source: NCBI BLink).;uridine-ribohydrolase 1 transcript=eq;prot=eq; - 2 No
AT2G43970 ath RNA-binding protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 5436 Blast hits to 4197 proteins in 373 species: Archae - 4; Bacteria - 353; Metazoa - 1802; Fungi - 477; Plants - 426; Viruses - 18; Other Eukaryotes - 2356 (source: NCBI BLink).;RNA-binding protein transcript=eq;prot=eq; - 2 No
AT3G19090 ath RNA-binding protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT2G43970.1); Has 912 Blast hits to 912 proteins in 142 species: Archae - 0; Bacteria - 2; Metazoa - 538; Fungi - 65; Plants - 233; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).;RNA-binding protein transcript=eq;prot=eq; + 3 No
AT5G46250 ath RNA-binding protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 1603 Blast hits to 1601 proteins in 212 species: Archae - 0; Bacteria - 4; Metazoa - 875; Fungi - 249; Plants - 311; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).;RNA-binding protein transcript=eq;prot=eq; + 5 No
BD1G57470 bdi pid=Bradi1g57470.1;tid=Bradi1g57470.1;GeneName=Bradi1g57470;transcript=eq;prot=eq + Bd1 No
BD1G59630 bdi RRM domain containing protein similar to RRM containing predicted RNA-binding protein, [Sorghum bicolor] Sb02g000420 pid=Bradi1g59630.1;tid=Bradi1g59630.1;GeneName=Bradi1g59630;transcript=eq;prot=eq + Bd1 No
BD2G50237 bdi pid=Bradi2g50237.1;tid=Bradi2g50237.1;GeneName=Bradi2g50237;transcript=eq;prot=eq - Bd2 No
BD3G41890 bdi RRM domain containing protein similar to RNA recognition motif containing protein, [Sorghum bicolor] Sb08g007220 pid=Bradi3g41890.1;tid=Bradi3g41890.1;GeneName=Bradi3g41890;transcript=eq;prot=eq + Bd3 No
BD3G42790 bdi ribosylpyrimidine nucleosidase activity (Blast2GO) pid=Bradi3g42790.1;tid=Bradi3g42790.1;GeneName=Bradi3g42790;transcript=eq;prot=eq - Bd3 No
BD4G20900 bdi RRM domain containing protein similar to RNA recognition motif containing protein, [Sorghum bicolor] Sb08g007220 pid=Bradi4g20900.1;tid=Bradi4g20900.1;GeneName=Bradi4g20900;transcript=eq;prot=eq + Bd4 No
BD4G38490 bdi ribosylpyrimidine nucleosidase activity (Blast2GO) pid=Bradi4g38490.1;tid=Bradi4g38490.1;GeneName=Bradi4g38490;transcript=eq;prot=eq - Bd4 No
BD4G40040 bdi RRM domain containing protein similar to RNA recognition motif containing protein, [Sorghum bicolor] Sb08g007220 pid=Bradi4g40040.1;tid=Bradi4g40040.1;GeneName=Bradi4g40040;transcript=eq;prot=eq + Bd4 No
CP00005G00410 cpa name=evm.TU.supercontig_5.41;pid=evm.TU.supercontig_5.41;prot=eq;transcript=eq + supercontig_5 No
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