Gene family  

Sub-families
ORTHO000271 (73 genes in 23 species)
ORTHO003015 (30 genes in 19 species)
ORTHO007741 (22 genes in 16 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (7 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (15 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (21 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (7 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (8 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (5 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (13 genes)



The gene family HOM000647 has 160 genes in 23 species (6 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 160 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G15160 aly name=fgenesh1_pm.C_scaffold_2000778;pid=315745;prot=eq;tid=315745 - scaffold_2 No
AL3G18210 aly name=fgenesh1_pm.C_scaffold_3001474;pid=318458;prot=eq;tid=318458 + scaffold_3 No
AL4G01760 aly name=fgenesh2_kg.4__153__AT2G22300.2;pid=481093;prot=eq;tid=481093 + scaffold_4 No
AL6G09050 aly name=fgenesh2_kg.6__888__AT5G09410.2;pid=487754;prot=eq;tid=487754 + scaffold_6 No
AL7G27250 aly name=fgenesh1_pg.C_scaffold_7002321;pid=355148;prot=eq;tid=355148 - scaffold_7 No
AL8G30870 aly name=scaffold_803130.1;pid=919730;prot=eq;tid=951243 + scaffold_8 No
AT1G67310 ath Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Cell surface receptor IPT/TIG (InterPro:IPR002909), Ankyrin repeat (InterPro:IPR002110), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: signal responsive 1 (TAIR:AT2G22300.2); Has 4214 Blast hits to 2978 proteins in 268 species: Archae - 9; Bacteria - 179; Metazoa - 1855; Fungi - 220; Plants - 413; Viruses - 4; Other Eukaryotes - 1534 (source: NCBI BLink).;Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains transcript=eq;prot=eq; - 1 No
AT2G22300 ath Encodes a putative CAM binding transcription factor. Loss of function mutations show enhanced resistance to fungal and bacterial pathogens suggesting that CAMTA functions to suppress defense responses.;signal responsive 1 transcript=eq;prot=eq; + 2 No
AT3G16940 ath calmodulin binding;transcription regulators; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Cell surface receptor IPT/TIG (InterPro:IPR002909), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: calmodulin binding;transcription regulators (TAIR:AT4G16150.1); Has 5766 Blast hits to 3807 proteins in 309 species: Archae - 13; Bacteria - 199; Metazoa - 3382; Fungi - 247; Plants - 659; Viruses - 23; Other Eukaryotes - 1243 (source: NCBI BLink).;calmodulin binding;transcription regulators transcript=eq;prot=eq; + 3 No
AT4G16150 ath calmodulin binding;transcription regulators; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Ankyrin repeat (InterPro:IPR002110), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin binding;transcription regulators (TAIR:AT3G16940.1); Has 3526 Blast hits to 2387 proteins in 249 species: Archae - 2; Bacteria - 65; Metazoa - 2447; Fungi - 177; Plants - 543; Viruses - 8; Other Eukaryotes - 284 (source: NCBI BLink).;calmodulin binding;transcription regulators transcript=ne;prot=eq; + 4 No
AT5G09410 ath calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum);ethylene induced calmodulin binding protein transcript=eq;prot=eq; + 5 No
AT5G64220 ath Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ethylene induced calmodulin binding protein (TAIR:AT5G09410.2); Has 14517 Blast hits to 9081 proteins in 522 species: Archae - 46; Bacteria - 904; Metazoa - 8296; Fungi - 946; Plants - 937; Viruses - 67; Other Eukaryotes - 3321 (source: NCBI BLink).;Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains transcript=eq;prot=eq; + 5 No
BD1G21372 bdi pid=Bradi1g21372.1;tid=Bradi1g21372.1;GeneName=Bradi1g21372;transcript=eq;prot=eq - Bd1 No
BD1G27170 bdi ion channel activity (Blast2GO) pid=Bradi1g27170.1;tid=Bradi1g27170.1;GeneName=Bradi1g27170;transcript=eq;prot=eq - Bd1 No
BD1G60817 bdi pid=Bradi1g60817.1;tid=Bradi1g60817.1;GeneName=Bradi1g60817;transcript=eq;prot=eq - Bd1 No
BD1G71810 bdi microfilament motor activity (Blast2GO) pid=Bradi1g71810.2;tid=Bradi1g71810.2;GeneName=Bradi1g71810;transcript=eq;prot=eq + Bd1 No
BD2G59137 bdi pid=Bradi2g59137.1;tid=Bradi2g59137.1;GeneName=Bradi2g59137;transcript=eq;prot=eq - Bd2 No
BD3G23800 bdi microfilament motor activity (Blast2GO) pid=Bradi3g23800.1;tid=Bradi3g23800.1;GeneName=Bradi3g23800;transcript=eq;prot=eq + Bd3 No
BD5G08167 bdi pid=Bradi5g08167.1;tid=Bradi5g08167.1;GeneName=Bradi5g08167;transcript=eq;prot=eq + Bd5 No
CP00042G00480 cpa name=evm.TU.supercontig_42.48;pid=evm.TU.supercontig_42.48;prot=eq;transcript=eq - supercontig_42 No
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