Gene family  

Sub-families
ORTHO002376 (32 genes in 20 species)
ORTHO006104 (25 genes in 16 species)
ORTHO007686 (22 genes in 19 species)
View all sub-families (14)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (8 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (18 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (10 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (12 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (6 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (12 genes)



The gene family HOM000646 has 160 genes in 20 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 160 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G09300 aly name=scaffold_100999.1;pid=888205;prot=eq;tid=919718 + scaffold_1 No
AL1G29060 aly name=scaffold_103120.1;pid=890326;prot=eq;tid=921839 - scaffold_1 No
AL1G35060 aly name=Al_scaffold_0001_3451;pid=881684;prot=eq;tid=913197 + scaffold_1 No
AL2G15180 aly name=fgenesh2_kg.2__960__AT1G67328.1;pid=475830;prot=eq;tid=475830 + scaffold_2 No
AL2G20340 aly name=fgenesh1_pm.C_scaffold_2001166;pid=316133;prot=eq;tid=316133 + scaffold_2 No
AL3G35040 aly name=scaffold_303728.1;pid=899758;prot=eq;tid=931271 - scaffold_3 No
AL5G19700 aly name=scaffold_502047.1;pid=906343;prot=eq;tid=937856 - scaffold_5 No
AL6G32210 aly name=fgenesh2_kg.6__2979__AT4G09990.1;pid=489845;prot=eq;tid=489845 - scaffold_6 No
AL7G17240 aly name=scaffold_701837.1;pid=914095;prot=eq;tid=945608 + scaffold_7 No
AL8G33280 aly name=fgenesh2_kg.8__2694__AT5G67210.1;pid=496878;prot=eq;tid=496878 - scaffold_8 No
AT1G09610 ath Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT4G09990.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).;Protein of unknown function (DUF579) transcript=eq;prot=eq; + 1 No
AT1G27930 ath Function unknown. Interacts with eIF3.;Protein of unknown function (DUF579) transcript=eq;prot=eq; - 1 No
AT1G33800 ath Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT4G09990.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).;Protein of unknown function (DUF579) transcript=eq;prot=eq; + 1 No
AT1G67330 ath Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G27930.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).;Protein of unknown function (DUF579) transcript=eq;prot=eq; + 1 No
AT1G71690 ath Protein of unknown function (DUF579); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT4G09990.1); Has 254 Blast hits to 253 proteins in 21 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).;Protein of unknown function (DUF579) transcript=eq;prot=eq; + 1 No
AT2G15440 ath Protein of unknown function (DUF579); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT5G67210.1); Has 253 Blast hits to 252 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).;Protein of unknown function (DUF579) transcript=eq;prot=eq; - 2 No
AT3G50220 ath Protein of unknown function (DUF579); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT5G67210.1); Has 252 Blast hits to 252 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).;Protein of unknown function (DUF579) transcript=eq;prot=eq; - 3 No
AT4G09990 ath Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G33800.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).;Protein of unknown function (DUF579) transcript=eq;prot=eq; - 4 No
AT4G24910 ath Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT5G67210.1); Has 253 Blast hits to 252 proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa - 1; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).;Protein of unknown function (DUF579) transcript=eq;prot=eq; - 4 No
AT5G67210 ath Protein of unknown function (DUF579); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT3G50220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Protein of unknown function (DUF579) transcript=eq;prot=eq; + 5 No
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