Gene family  

Sub-families
ORTHO000969 (44 genes in 25 species)
ORTHO003878 (28 genes in 24 species)
ORTHO013255 (14 genes in 13 species)
View all sub-families (16)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (10 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (10 genes)
mdo
Malus domestica (13 genes)
mes
Manihot esculenta (8 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (9 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (9 genes)



The gene family HOM000645 has 160 genes in 25 species (12 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 8, showing 20 records out of 160 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G28840 aly name=fgenesh2_kg.1__2922__AT1G27630.1;pid=472968;prot=eq;tid=472968 + scaffold_1 No
AL1G37220 aly name=fgenesh2_kg.1__3629__AT1G35440.1;pid=473675;prot=eq;tid=473675 - scaffold_1 No
AL4G08790 aly name=fgenesh2_kg.4__560__AT2G26430.1;pid=481500;prot=eq;tid=481500 - scaffold_4 No
AL7G22950 aly name=fgenesh2_kg.7__2339__AT4G19600.1;pid=492906;prot=eq;tid=492906 - scaffold_7 No
AL7G23030 aly name=fgenesh2_kg.7__2342__AT4G19560.1;pid=492909;prot=eq;tid=492909 - scaffold_7 No
AL8G03830 aly name=fgenesh2_kg.8__277__AT5G45190.1;pid=494461;prot=eq;tid=494461 + scaffold_8 No
AT1G27630 ath cyclin T 1;3 (CYCT1;3); CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G45190.1); Has 1569 Blast hits to 1569 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 847; Fungi - 342; Plants - 269; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).;cyclin T 1;3 transcript=eq;prot=eq; + 1 No
AT1G35440 ath cyclin T1;1 (CYCT1;1); CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G45190.1); Has 1935 Blast hits to 1935 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 1012; Fungi - 386; Plants - 395; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).;cyclin T1;1 transcript=eq;prot=eq; - 1 No
AT2G26430 ath Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.;arginine-rich cyclin 1 transcript=eq;prot=eq; - 2 No
AT4G19560 ath CYCT1;2; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Transcription regulator cyclin (InterPro:IPR015429), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G45190.1); Has 2418 Blast hits to 2418 proteins in 249 species: Archae - 4; Bacteria - 2; Metazoa - 1390; Fungi - 391; Plants - 394; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).;Cyclin family protein transcript=eq;prot=eq; + 4 No
AT4G19600 ath Encodes a cyclin T partner CYCT1;4. Plays important roles in infection with Cauliflower mosaic virus (CaMV).;Cyclin family protein transcript=eq;prot=eq; + 4 No
AT5G45190 ath Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV).;Cyclin family protein transcript=eq;prot=eq; - 5 No
BD1G29537 bdi pid=Bradi1g29537.1;tid=Bradi1g29537.1;GeneName=Bradi1g29537;transcript=eq;prot=eq - Bd1 No
BD1G47510 bdi protein serine/threonine kinase activity (Blast2GO) pid=Bradi1g47510.1;tid=Bradi1g47510.1;GeneName=Bradi1g47510;transcript=eq;prot=eq + Bd1 No
BD1G55310 bdi pid=Bradi1g55310.1;tid=Bradi1g55310.1;GeneName=Bradi1g55310;transcript=eq;prot=eq - Bd1 No
BD1G55340 bdi pid=Bradi1g55340.1;tid=Bradi1g55340.1;GeneName=Bradi1g55340;transcript=eq;prot=eq - Bd1 Yes
BD2G13487 bdi pid=Bradi2g13487.1;tid=Bradi2g13487.1;GeneName=Bradi2g13487;transcript=eq;prot=eq - Bd2 No
BD2G22097 bdi pid=Bradi2g22097.1;tid=Bradi2g22097.1;GeneName=Bradi2g22097;transcript=eq;prot=eq - Bd2 No
BD3G03010 bdi pid=Bradi3g03010.1;tid=Bradi3g03010.1;GeneName=Bradi3g03010;transcript=eq;prot=eq - Bd3 No
BD3G11180 bdi pid=Bradi3g11180.1;tid=Bradi3g11180.1;GeneName=Bradi3g11180;transcript=eq;prot=eq + Bd3 No
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