Gene family  

Sub-families
ORTHO002104 (33 genes in 15 species)
ORTHO006518 (24 genes in 18 species)
ORTHO006861 (24 genes in 16 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (9 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (15 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (13 genes)
mes
Manihot esculenta (9 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ppa
Physcomitrella patens (9 genes)
ptr
Populus trichocarpa (13 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (8 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (9 genes)
zma
Zea mays (12 genes)



The gene family HOM000640 has 161 genes in 23 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 161 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G06300 aly name=fgenesh2_kg.1__652__AT1G06760.1;pid=470698;prot=eq;tid=470698 - scaffold_1 No
AL3G38980 aly name=fgenesh2_kg.3__3412__AT2G18050.1;pid=480711;prot=eq;tid=480711 + scaffold_3 No
AL4G15250 aly name=fgenesh2_kg.4__1039__AT2G30620.1;pid=481979;prot=eq;tid=481979 + scaffold_4 No
AL4G32500 aly name=fgenesh2_kg.4__2661__AT2G44710.1;pid=483601;prot=eq;tid=483601 + scaffold_4 No
AT1G06760 ath winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT2G30620.1); Has 20265 Blast hits to 10904 proteins in 1494 species: Archae - 37; Bacteria - 8386; Metazoa - 4718; Fungi - 1128; Plants - 980; Viruses - 120; Other Eukaryotes - 4896 (source: NCBI BLink).;winged-helix DNA-binding transcription factor family protein transcript=eq;prot=eq; - 1 No
AT2G18050 ath encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.;histone H1-3 transcript=eq;prot=eq; + 2 No
AT2G30620 ath winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Histone H5 (InterPro:IPR005819), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT1G06760.1); Has 19743 Blast hits to 11193 proteins in 1486 species: Archae - 45; Bacteria - 7849; Metazoa - 5019; Fungi - 1189; Plants - 983; Viruses - 143; Other Eukaryotes - 4515 (source: NCBI BLink).;winged-helix DNA-binding transcription factor family protein transcript=eq;prot=eq; + 2 No
AT2G44710 ath RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G00830.2); Has 31429 Blast hits to 23398 proteins in 2969 species: Archae - 812; Bacteria - 21040; Metazoa - 874; Fungi - 1027; Plants - 329; Viruses - 0; Other Eukaryotes - 7347 (source: NCBI BLink).;RNA-binding (RRM/RBD/RNP motifs) family protein transcript=eq;prot=eq; + 2 No
BD1G00517 bdi pid=Bradi1g00517.1;tid=Bradi1g00517.1;GeneName=Bradi1g00517;transcript=eq;prot=eq - Bd1 No
BD1G05330 bdi pid=Bradi1g05330.1;tid=Bradi1g05330.1;GeneName=Bradi1g05330;transcript=eq;prot=eq - Bd1 No
BD1G28670 bdi RRM domain containing protein similar to RNA recognition motif, predicted splicing factor, SR protein family, [Sorghum bicolor] Sb02g010900 pid=Bradi1g28670.1;tid=Bradi1g28670.1;GeneName=Bradi1g28670;transcript=eq;prot=eq - Bd1 No
BD1G55260 bdi pid=Bradi1g55260.1;tid=Bradi1g55260.1;GeneName=Bradi1g55260;transcript=eq;prot=eq - Bd1 No
BD3G22570 bdi RRM domain containing protein similar to RNA binding protein, [Oryza sativa] LOC_Os10g0167500 pid=Bradi3g22570.1;tid=Bradi3g22570.1;GeneName=Bradi3g22570;transcript=eq;prot=eq + Bd3 No
BD5G17270 bdi RRM domain containing protein similar to expressed RNA recognition motif containing protein, [Oryza sativa] LOC_Os04g45930 pid=Bradi5g17270.1;tid=Bradi5g17270.1;GeneName=Bradi5g17270;transcript=eq;prot=eq + Bd5 No
BD5G19000 bdi pid=Bradi5g19000.1;tid=Bradi5g19000.1;GeneName=Bradi5g19000;transcript=eq;prot=eq + Bd5 No
CP00003G02810 cpa name=evm.TU.supercontig_3.281;pid=evm.TU.supercontig_3.281;prot=eq;transcript=eq + supercontig_3 No
CP00006G02220 cpa name=evm.TU.supercontig_6.223;pid=evm.TU.supercontig_6.223;prot=eq;transcript=eq - supercontig_6 No
CP00041G00690 cpa name=evm.TU.supercontig_41.69;pid=evm.TU.supercontig_41.69;prot=eq;transcript=eq + supercontig_41 No
CP00051G01510 cpa name=evm.TU.supercontig_51.151;pid=evm.TU.supercontig_51.151;prot=eq;transcript=eq + supercontig_51 No
CP00052G01390 cpa name=evm.TU.supercontig_52.140;pid=evm.TU.supercontig_52.140;prot=eq;transcript=eq + supercontig_52 No
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