Gene family  

Sub-families
ORTHO000739 (48 genes in 22 species)
ORTHO005665 (25 genes in 16 species)
ORTHO006014 (25 genes in 18 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (9 genes)
gma
Glycine max (13 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (41 genes)
mes
Manihot esculenta (8 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (12 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (4 genes)



The gene family HOM000634 has 163 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 163 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G09920 aly name=Al_scaffold_0669_1;pid=855965;prot=eq;tid=887478 + scaffold_669 No
AL2G03420 aly name=fgenesh2_kg.2__262__AT1G62040.1;pid=475132;prot=eq;tid=475132 - scaffold_2 No
AL3G06530 aly name=fgenesh2_kg.3__646__AT3G06420.1;pid=477945;prot=eq;tid=477945 - scaffold_3 No
AL3G16550 aly name=fgenesh2_kg.3__1708__AT3G15580.1;pid=479007;prot=eq;tid=479007 - scaffold_3 No
AL3G31170 aly name=fgenesh2_kg.3__2886__AT2G05630.1;pid=480185;prot=eq;tid=480185 - scaffold_3 No
AL4G33050 aly name=fgenesh2_kg.4__2712__AT2G45170.1;pid=483652;prot=eq;tid=483652 + scaffold_4 No
AL5G31360 aly name=scaffold_503299.1;pid=907595;prot=eq;tid=939108 + scaffold_5 No
AL6G36470 aly name=scaffold_603777.1;pid=911720;prot=eq;tid=943233 - scaffold_6 No
AL7G20400 aly name=Al_scaffold_0007_1962;pid=858463;prot=eq;tid=889976 - scaffold_7 No
AL7G26700 aly name=scaffold_702834.1;pid=915092;prot=eq;tid=946605 + scaffold_7 No
AT1G62040 ath autophagy 8c (ATG8C); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2).;Ubiquitin-like superfamily protein transcript=eq;prot=eq; + 1 No
AT2G05630 ath in the Arabidopsis autophagy pathway;Ubiquitin-like superfamily protein transcript=eq;prot=eq; - 2 No
AT2G45170 ath Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.;AUTOPHAGY 8E transcript=eq;prot=eq; + 2 No
AT3G06420 ath autophagy 8h (ATG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1); Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 178; Plants - 301; Viruses - 3; Other Eukaryotes - 272 (source: NCBI BLink).;Ubiquitin-like superfamily protein transcript=eq;prot=eq; - 3 No
AT3G15580 ath Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition.;Ubiquitin-like superfamily protein transcript=eq;prot=eq; - 3 No
AT3G60640 ath AUTOPHAGY 8G (ATG8G); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G16520.2); Has 1513 Blast hits to 1511 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 719; Fungi - 178; Plants - 302; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).;Ubiquitin-like superfamily protein transcript=eq;prot=eq; + 3 No
AT4G04620 ath autophagy 8b (ATG8B); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2); Has 1515 Blast hits to 1513 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 720; Fungi - 178; Plants - 303; Viruses - 3; Other Eukaryotes - 311 (source: NCBI BLink).;Ubiquitin-like superfamily protein transcript=eq;prot=eq; - 4 No
AT4G16520 ath autophagy 8f (ATG8F); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G60640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ubiquitin-like superfamily protein transcript=eq;prot=eq; - 4 No
AT4G21980 ath Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation.;Ubiquitin-like superfamily protein transcript=eq;prot=eq; + 4 No
BD0G00120 bdi beta-tubulin binding, microtubule binding (Blast2GO) pid=Bradi0098s00200.5;tid=Bradi0098s00200.5;GeneName=Bradi0098s00200;transcript=eq;prot=eq + scaffold_98 No
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