Gene family  

Sub-families
ORTHO003483 (29 genes in 23 species)
ORTHO007358 (23 genes in 19 species)
ORTHO008165 (22 genes in 22 species)
View all sub-families (14)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (6 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (16 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (5 genes)
mtr
Medicago truncatula (6 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (8 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (7 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (7 genes)



The gene family HOM000625 has 163 genes in 25 species (22 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 163 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G10810 aly name=fgenesh1_pg.C_scaffold_1000929;pid=334364;prot=eq;tid=334364 - scaffold_1 No
AL1G10830 aly name=fgenesh1_pg.C_scaffold_1000931;pid=334366;prot=eq;tid=334366 - scaffold_1 No
AL5G07100 aly name=fgenesh2_kg.5__573__AT3G27925.1;pid=484581;prot=eq;tid=484581 - scaffold_5 No
AL5G07110 aly name=fgenesh2_kg.5__574__AT3G27930.1;pid=484582;prot=eq;tid=484582 - scaffold_5 No
AL6G27620 aly name=fgenesh2_kg.6__2696__AT5G27660.1;pid=489562;prot=eq;tid=489562 + scaffold_6 No
AL7G24410 aly name=fgenesh2_kg.7__2460__AT4G18370.1;pid=493027;prot=eq;tid=493027 - scaffold_7 No
AL7G38400 aly name=fgenesh2_kg.7__3440__AT5G39830.1;pid=494007;prot=eq;tid=494007 - scaffold_7 No
AT3G27925 ath Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.;DegP protease 1 transcript=eq;prot=eq; - 3 No
AT3G27930 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 35 Blast hits to 35 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
AT4G18370 ath Encodes DEG5. Forms a hexamer with DEG8 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII).;DEGP protease 5 transcript=eq;prot=eq; + 4 No
AT5G27660 ath Trypsin family protein with PDZ domain; FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 16463 Blast hits to 16423 proteins in 2614 species: Archae - 115; Bacteria - 10782; Metazoa - 377; Fungi - 151; Plants - 529; Viruses - 0; Other Eukaryotes - 4509 (source: NCBI BLink).;Trypsin family protein with PDZ domain transcript=eq;prot=eq; - 5 No
AT5G39830 ath Encodes DEG8. Forms a hexamer with DEG5 in the thylakoid lumen. Involved in the cleavage of photodamaged D2 protein of photosystem II (PSII). Recombinant DEG8 is proteolytically active toward both a model substrate (beta-casein) and photodamaged D1 protein of photosystem II.;Trypsin family protein with PDZ domain transcript=eq;prot=eq; + 5 No
BD2G15540 bdi pid=Bradi2g15540.1;tid=Bradi2g15540.1;GeneName=Bradi2g15540;transcript=eq;prot=eq + Bd2 Yes
BD2G15550 bdi pid=Bradi2g15550.1;tid=Bradi2g15550.1;GeneName=Bradi2g15550;transcript=eq;prot=eq + Bd2 No
BD2G15980 bdi serine-type endopeptidase activity (Blast2GO) pid=Bradi2g15980.1;tid=Bradi2g15980.1;GeneName=Bradi2g15980;transcript=eq;prot=eq + Bd2 No
BD4G01490 bdi serine-type endopeptidase activity (Blast2GO) pid=Bradi4g01490.1;tid=Bradi4g01490.1;GeneName=Bradi4g01490;transcript=eq;prot=eq - Bd4 No
BD4G20960 bdi serine-type endopeptidase activity (Blast2GO) pid=Bradi4g20960.1;tid=Bradi4g20960.1;GeneName=Bradi4g20960;transcript=eq;prot=eq - Bd4 No
BD5G12370 bdi serine-type endopeptidase activity (Blast2GO) pid=Bradi5g12370.1;tid=Bradi5g12370.1;GeneName=Bradi5g12370;transcript=eq;prot=eq + Bd5 No
CP00014G00050 cpa name=evm.TU.supercontig_14.5;pid=evm.TU.supercontig_14.5;prot=eq;transcript=eq + supercontig_14 No
CP00017G00050 cpa name=evm.TU.supercontig_17.5;pid=evm.TU.supercontig_17.5;prot=eq;transcript=eq - supercontig_17 No
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