Gene family  

Sub-families
ORTHO005483 (25 genes in 22 species)
ORTHO007673 (22 genes in 22 species)
ORTHO007692 (22 genes in 22 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (10 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (9 genes)
mrcc299
Micromonas sp. RCC299 (5 genes)
mtr
Medicago truncatula (8 genes)
olu
Ostreococcus lucimarinus (5 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (8 genes)
ota
Ostreococcus tauri (4 genes)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (7 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (7 genes)



The gene family HOM000618 has 164 genes in 24 species (12 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 164 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G02330 aly name=scaffold_2600009.1;pid=920445;prot=eq;tid=951958 - scaffold_26 No
AL1G11090 aly name=fgenesh2_kg.1__1185__AT1G10930.1;pid=471231;prot=eq;tid=471231 - scaffold_1 No
AL1G29020 aly name=fgenesh2_kg.1__2944__AT1G27880.1;pid=472990;prot=eq;tid=472990 + scaffold_1 No
AL1G36580 aly name=scaffold_103920.1;pid=891126;prot=eq;tid=922639 - scaffold_1 No
AL2G05030 aly name=Al_scaffold_0002_448;pid=875854;prot=eq;tid=907367 + scaffold_2 No
AL6G27600 aly name=fgenesh2_kg.6__2694__AT5G27680.1;pid=489560;prot=eq;tid=489560 + scaffold_6 No
AL7G05080 aly name=fgenesh2_kg.7__506__AT4G35740.1;pid=491073;prot=eq;tid=491073 - scaffold_7 No
AT1G10930 ath DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.;DNA helicase (RECQl4A) transcript=eq;prot=eq; - 1 No
AT1G27880 ath DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT4G35740.1); Has 41244 Blast hits to 39032 proteins in 2984 species: Archae - 762; Bacteria - 21282; Metazoa - 5401; Fungi - 4173; Plants - 3671; Viruses - 588; Other Eukaryotes - 5367 (source: NCBI BLink).;DEAD/DEAH box RNA helicase family protein transcript=eq;prot=eq; + 1 No
AT1G31360 ath Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro.;RECQ helicase L2 transcript=eq;prot=eq; + 1 No
AT1G60930 ath AtRECQ4B mutant showed no sensitivity to DNA damaging agents.Involved in homologous recombination.;RECQ helicase L4B transcript=ne;prot=eq; - 1 No
AT3G05740 ath RECQ helicase l1 (RECQI1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DNA helicase (RECQl4A) (TAIR:AT1G10930.1); Has 22913 Blast hits to 22836 proteins in 2673 species: Archae - 358; Bacteria - 13443; Metazoa - 2936; Fungi - 2132; Plants - 1261; Viruses - 9; Other Eukaryotes - 2774 (source: NCBI BLink).;RECQ helicase l1 transcript=eq;prot=eq; + 3 No
AT4G35740 ath Encodes RECQ3, an ATP-dependent helicase.;DEAD/DEAH box RNA helicase family protein transcript=eq;prot=eq; + 4 No
AT5G27680 ath DNA helicase;RECQ helicase SIM transcript=eq;prot=eq; - 5 No
BD1G17580 bdi pid=Bradi1g17580.1;tid=Bradi1g17580.1;GeneName=Bradi1g17580;transcript=eq;prot=eq - Bd1 No
BD1G74287 bdi pid=Bradi1g74287.1;tid=Bradi1g74287.1;GeneName=Bradi1g74287;transcript=eq;prot=eq + Bd1 No
BD2G35707 bdi pid=Bradi2g35707.1;tid=Bradi2g35707.1;GeneName=Bradi2g35707;transcript=eq;prot=eq + Bd2 No
BD3G57087 bdi pid=Bradi3g57087.1;tid=Bradi3g57087.1;GeneName=Bradi3g57087;transcript=eq;prot=eq + Bd3 No
BD4G03880 bdi ATP-dependent helicase activity (Blast2GO) pid=Bradi4g03880.1;tid=Bradi4g03880.1;GeneName=Bradi4g03880;transcript=eq;prot=eq + Bd4 Yes
BD4G10110 bdi single-stranded DNA-dependent ATP-dependent DNA helicase activity, ATP-dependent 3'-5' DNA helicase activity (Blast2GO) pid=Bradi4g10110.1;tid=Bradi4g10110.1;GeneName=Bradi4g10110;transcript=eq;prot=eq - Bd4 No
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