Gene family  

Sub-families
ORTHO001370 (39 genes in 18 species)
ORTHO008353 (21 genes in 18 species)
ORTHO011962 (16 genes in 11 species)
View all sub-families (14)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (9 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (20 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (12 genes)
mes
Manihot esculenta (8 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (7 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (11 genes)
tca
Theobroma cacao (16 genes)
vvi
Vitis vinifera (11 genes)
zma
Zea mays (6 genes)



The gene family HOM000616 has 164 genes in 21 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 164 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G06810 aly name=scaffold_100727.1;pid=887933;prot=eq;tid=919446 - scaffold_1 No
AL2G01710 aly name=fgenesh2_kg.2__140__AT1G63420.1;pid=475010;prot=eq;tid=475010 - scaffold_2 No
AL4G33800 aly name=fgenesh2_kg.4__2781__AT2G45830.1;pid=483721;prot=eq;tid=483721 + scaffold_4 No
AL4G33810 aly name=fgenesh2_kg.4__2783__AT2G45840.1;pid=483723;prot=eq;tid=483723 + scaffold_4 No
AL5G17920 aly name=fgenesh2_kg.5__1248__AT3G48980.1;pid=485256;prot=eq;tid=485256 + scaffold_5 No
AL5G31950 aly name=fgenesh2_kg.5__2596__AT3G61270.1;pid=486604;prot=eq;tid=486604 + scaffold_5 No
AL5G31960 aly name=Al_scaffold_0005_3057;pid=867578;prot=eq;tid=899091 + scaffold_5 No
AL5G31970 aly name=scaffold_503361.1;pid=907657;prot=eq;tid=939170 + scaffold_5 No
AL6G23640 aly name=scaffold_602453.1;pid=910396;prot=eq;tid=941909 + scaffold_6 No
AT1G07220 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT5G23850.1); Has 670 Blast hits to 661 proteins in 130 species: Archae - 0; Bacteria - 41; Metazoa - 224; Fungi - 131; Plants - 246; Viruses - 2; Other Eukaryotes - 26 (source: NCBI BLink).;Arabidopsis thaliana protein of unknown function (DUF821) transcript=eq;prot=eq; - 1 No
AT1G63420 ath CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G48980.1); Has 676 Blast hits to 667 proteins in 137 species: Archae - 0; Bacteria - 46; Metazoa - 225; Fungi - 109; Plants - 251; Viruses - 8; Other Eukaryotes - 37 (source: NCBI BLink).;Arabidopsis thaliana protein of unknown function (DUF821) transcript=eq;prot=eq; + 1 No
AT2G45830 ath downstream target of AGL15 2 (DTA2); CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G61270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;downstream target of AGL15 2 transcript=eq;prot=eq; + 2 No
AT2G45840 ath CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G61280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Arabidopsis thaliana protein of unknown function (DUF821) transcript=eq;prot=eq; + 2 No
AT3G48980 ath CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT5G23850.1); Has 681 Blast hits to 670 proteins in 130 species: Archae - 0; Bacteria - 50; Metazoa - 231; Fungi - 111; Plants - 251; Viruses - 2; Other Eukaryotes - 36 (source: NCBI BLink).;Arabidopsis thaliana protein of unknown function (DUF821) transcript=eq;prot=eq; + 3 No
AT3G61270 ath CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: downstream target of AGL15 2 (TAIR:AT2G45830.1); Has 681 Blast hits to 670 proteins in 131 species: Archae - 0; Bacteria - 40; Metazoa - 228; Fungi - 123; Plants - 254; Viruses - 5; Other Eukaryotes - 31 (source: NCBI BLink).;Arabidopsis thaliana protein of unknown function (DUF821) transcript=eq;prot=eq; + 3 No
AT3G61280 ath CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G61290.1); Has 683 Blast hits to 672 proteins in 134 species: Archae - 0; Bacteria - 47; Metazoa - 230; Fungi - 121; Plants - 246; Viruses - 5; Other Eukaryotes - 34 (source: NCBI BLink).;Arabidopsis thaliana protein of unknown function (DUF821) transcript=eq;prot=eq; + 3 No
AT3G61290 ath CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G61280.1); Has 665 Blast hits to 654 proteins in 126 species: Archae - 0; Bacteria - 41; Metazoa - 225; Fungi - 116; Plants - 250; Viruses - 2; Other Eukaryotes - 31 (source: NCBI BLink).;Arabidopsis thaliana protein of unknown function (DUF821) transcript=eq;prot=eq; + 3 No
AT5G23850 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G48980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Arabidopsis thaliana protein of unknown function (DUF821) transcript=eq;prot=eq; + 5 No
BD1G61560 bdi Putative glycosyltransferase CAZy family GT90 pid=Bradi1g61560.1;tid=Bradi1g61560.1;GeneName=Bradi1g61560;Name=BdGT90A5;transcript=eq;prot=eq - Bd1 No
BD2G07460 bdi Putative glycosyltransferase CAZy family GT90 pid=Bradi2g07460.1;tid=Bradi2g07460.1;GeneName=Bradi2g07460;Name=BdGT90A6;transcript=eq;prot=eq + Bd2 No
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