Gene family  

Sub-families
ORTHO008495 (21 genes in 16 species)
ORTHO010670 (18 genes in 14 species)
ORTHO011257 (17 genes in 12 species)
View all sub-families (15)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (19 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (19 genes)
mes
Manihot esculenta (10 genes)
mtr
Medicago truncatula (13 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (6 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (11 genes)



The gene family HOM000612 has 165 genes in 21 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 165 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G28090 aly name=scaffold_103012.1;pid=890218;prot=eq;tid=921731 + scaffold_1 No
AL1G48450 aly name=scaffold_105162.1;pid=892368;prot=eq;tid=923881 + scaffold_1 Yes
AL2G15850 aly name=fgenesh2_kg.2__1015__AT1G67800.2;pid=475885;prot=eq;tid=475885 - scaffold_2 No
AL2G28390 aly name=fgenesh2_kg.2__2233__AT1G79380.1;pid=477103;prot=eq;tid=477103 + scaffold_2 No
AL3G00460 aly name=scaffold_300049.1;pid=896079;prot=eq;tid=927592 - scaffold_3 No
AL6G14200 aly name=fgenesh2_kg.6__1418__AT5G14420.2;pid=488284;prot=eq;tid=488284 - scaffold_6 No
AL8G24380 aly name=Al_scaffold_0008_2322;pid=886058;prot=eq;tid=917571 + scaffold_8 No
AL8G30620 aly name=fgenesh1_pm.C_scaffold_8001958;pid=332615;prot=eq;tid=332615 - scaffold_8 No
AT1G67800 ath Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase2 (TAIR:AT5G14420.2); Has 1564 Blast hits to 1559 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 894; Fungi - 2; Plants - 394; Viruses - 12; Other Eukaryotes - 260 (source: NCBI BLink).;Copine (Calcium-dependent phospholipid-binding protein) family transcript=eq;prot=eq; - 1 No
AT1G79380 ath Ca(2)-dependent phospholipid-binding protein (Copine) family; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase2 (TAIR:AT5G14420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ca(2)-dependent phospholipid-binding protein (Copine) family transcript=eq;prot=eq; + 1 No
AT3G01650 ath RING domain ligase1 (RGLG1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation, cytokinin metabolic process, auxin metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase2 (TAIR:AT5G14420.2); Has 24426 Blast hits to 13505 proteins in 916 species: Archae - 24; Bacteria - 3147; Metazoa - 7235; Fungi - 3380; Plants - 4548; Viruses - 743; Other Eukaryotes - 5349 (source: NCBI BLink).;RING domain ligase1 transcript=eq;prot=eq; + 3 No
AT5G14420 ath RING domain ligase2 (RGLG2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation, cytokinin metabolic process, auxin metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 2368 Blast hits to 2301 proteins in 208 species: Archae - 0; Bacteria - 31; Metazoa - 1318; Fungi - 57; Plants - 528; Viruses - 55; Other Eukaryotes - 379 (source: NCBI BLink).;RING domain ligase2 transcript=eq;prot=eq; - 5 No
AT5G63970 ath Copine (Calcium-dependent phospholipid-binding protein) family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Copine (Calcium-dependent phospholipid-binding protein) family transcript=eq;prot=eq; - 5 No
BD1G36250 bdi RING, subfamily copine-1, putative pid=Bradi1g36250.1;tid=Bradi1g36250.1;GeneName=Bradi1g36250;transcript=eq;prot=eq + Bd1 No
BD2G58190 bdi RING, subfamily copine, putative pid=Bradi2g58190.1;tid=Bradi2g58190.1;GeneName=Bradi2g58190;transcript=eq;prot=eq - Bd2 No
BD2G61442 bdi pid=Bradi2g61442.2;tid=Bradi2g61442.2;GeneName=Bradi2g61442;transcript=eq;prot=eq - Bd2 No
BD3G14420 bdi RING, subfamily copine-6, putative pid=Bradi3g14420.1;tid=Bradi3g14420.1;GeneName=Bradi3g14420;transcript=eq;prot=eq + Bd3 No
BD3G39190 bdi RING, subfamily copine, putative pid=Bradi3g39190.1;tid=Bradi3g39190.1;GeneName=Bradi3g39190;transcript=eq;prot=eq - Bd3 No
BD4G39040 bdi RING, subfamily copine, putative pid=Bradi4g39040.1;tid=Bradi4g39040.1;GeneName=Bradi4g39040;transcript=eq;prot=eq + Bd4 No
CP00004G00190 cpa name=evm.TU.supercontig_4.19;pid=evm.TU.supercontig_4.19;prot=eq;transcript=eq - supercontig_4 No
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