Gene family  

Sub-families
ORTHO000169 (88 genes in 25 species)
ORTHO010178 (19 genes in 18 species)
ORTHO028312 (4 genes in 1 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (17 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (10 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (14 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (5 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (8 genes)



The gene family HOM000602 has 167 genes in 25 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 167 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G01880 aly name=scaffold_100205.1;pid=887411;prot=eq;tid=918924 + scaffold_1 No
AL1G08940 aly name=scaffold_100962.1;pid=888168;prot=eq;tid=919681 + scaffold_1 No
AL1G40360 aly name=scaffold_104285.1;pid=891491;prot=eq;tid=923004 + scaffold_1 No
AL1G52250 aly name=fgenesh2_kg.1__4732__AT1G55035.1;pid=474778;prot=eq;tid=474778 - scaffold_1 No
AL3G07020 aly name=fgenesh2_kg.3__687__AT3G06720.1;pid=477986;prot=eq;tid=477986 + scaffold_3 No
AL6G02180 aly name=fgenesh2_kg.6__214__AT5G03070.1;pid=487080;prot=eq;tid=487080 - scaffold_6 No
AL6G15440 aly name=scaffold_601592.1;pid=909535;prot=eq;tid=941048 - scaffold_6 No
AL6G34860 aly name=scaffold_603606.1;pid=911549;prot=eq;tid=943062 + scaffold_6 No
AL6G39280 aly name=fgenesh2_kg.6__3491__AT4G02150.1;pid=490357;prot=eq;tid=490357 + scaffold_6 No
AL7G27290 aly name=scaffold_702897.1;pid=915155;prot=eq;tid=946668 + scaffold_7 No
AL8G12990 aly name=scaffold_801311.1;pid=917911;prot=eq;tid=949424 - scaffold_8 No
AT1G02690 ath Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.;importin alpha isoform 6 transcript=eq;prot=eq; + 1 No
AT1G09270 ath Protein interacts with Agrobacterium proteins VirD2 and VirE2.;importin alpha isoform 4 transcript=eq;prot=eq; + 1 No
AT1G32880 ath ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 1 (TAIR:AT3G06720.2); Has 1206 Blast hits to 1169 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 694; Fungi - 159; Plants - 216; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; - 1 No
AT3G05720 ath Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.;importin alpha isoform 7 transcript=eq;prot=eq; - 3 No
AT3G06720 ath Encodes importin alpha involved in nuclear import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.;importin alpha isoform 1 transcript=eq;prot=eq; + 3 No
AT4G02150 ath Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.;ARM repeat superfamily protein transcript=eq;prot=eq; - 4 No
AT4G16143 ath Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.;importin alpha isoform 2 transcript=eq;prot=eq; - 4 No
AT5G03070 ath Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.;importin alpha isoform 9 transcript=eq;prot=eq; - 5 No
AT5G49310 ath Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.;importin alpha isoform 5 transcript=eq;prot=eq; - 5 No
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