Gene family  

Sub-families
ORTHO002485 (32 genes in 22 species)
ORTHO006522 (24 genes in 16 species)
ORTHO014017 (12 genes in 11 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (8 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (10 genes)
mtr
Medicago truncatula (10 genes)
osa
Oryza sativa ssp. japonica (9 genes)
osaindica
Oryza sativa ssp. indica (9 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (15 genes)
rco
Ricinus communis (10 genes)
sbi
Sorghum bicolor (13 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (9 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (11 genes)



The gene family HOM000592 has 169 genes in 23 species (9 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 169 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G08170 aly name=scaffold_38400004.1;pid=920612;prot=eq;tid=952125 - scaffold_384 No
AL1G12920 aly name=fgenesh2_kg.1__1358__AT1G12550.1;pid=471404;prot=eq;tid=471404 + scaffold_1 No
AL2G15360 aly name=scaffold_201558.1;pid=894484;prot=eq;tid=925997 - scaffold_2 No
AL2G29930 aly name=fgenesh2_kg.2__2409__AT1G79870.1;pid=477279;prot=eq;tid=477279 - scaffold_2 No
AL4G33530 aly name=fgenesh2_kg.4__2758__AT2G45620.1;pid=483698;prot=eq;tid=483698 + scaffold_4 No
AL4G33540 aly name=scaffold_403509.1;pid=904008;prot=eq;tid=935521 + scaffold_4 No
AT1G12550 ath D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT2G45630.2); Has 29393 Blast hits to 29385 proteins in 2729 species: Archae - 468; Bacteria - 18116; Metazoa - 729; Fungi - 1168; Plants - 597; Viruses - 5; Other Eukaryotes - 8310 (source: NCBI BLink).;D-isomer specific 2-hydroxyacid dehydrogenase family protein transcript=eq;prot=eq; + 1 No
AT1G79870 ath D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 29704 Blast hits to 29696 proteins in 2729 species: Archae - 468; Bacteria - 18164; Metazoa - 733; Fungi - 1180; Plants - 594; Viruses - 5; Other Eukaryotes - 8560 (source: NCBI BLink).;D-isomer specific 2-hydroxyacid dehydrogenase family protein transcript=eq;prot=eq; + 1 No
AT2G45620 ath Nucleotidyltransferase family protein; FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT3G45750.1); Has 1962 Blast hits to 1846 proteins in 232 species: Archae - 0; Bacteria - 9; Metazoa - 921; Fungi - 372; Plants - 185; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).;Nucleotidyltransferase family protein transcript=eq;prot=eq; + 2 No
AT2G45630 ath D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: NAD or NADH binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, binding, catalytic activity, cofactor binding; INVOLVED IN: metabolic process; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;D-isomer specific 2-hydroxyacid dehydrogenase family protein transcript=eq;prot=eq; + 2 No
AT5G28310 ath NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT2G45630.2); Has 3325 Blast hits to 3321 proteins in 1019 species: Archae - 92; Bacteria - 2407; Metazoa - 35; Fungi - 115; Plants - 159; Viruses - 0; Other Eukaryotes - 517 (source: NCBI BLink).;NAD(P)-binding Rossmann-fold superfamily protein transcript=eq;prot=eq; - 5 No
BD2G07650 bdi hydroxypyruvate reductase activity, glyoxylate reductase activity, phosphoglycerate dehydrogenase activity, glycerate dehydrogenase activity, glyoxylate reductase (NADP) activity (Blast2GO) pid=Bradi2g07650.1;tid=Bradi2g07650.1;GeneName=Bradi2g07650;transcript=eq;prot=eq - Bd2 No
BD3G02160 bdi DNA-directed DNA polymerase activity (Blast2GO) pid=Bradi3g02160.1;tid=Bradi3g02160.1;GeneName=Bradi3g02160;transcript=eq;prot=eq + Bd3 No
BD3G19270 bdi hydroxypyruvate reductase activity, glyoxylate reductase activity, glycerate dehydrogenase activity, glyoxylate reductase (NADP) activity (Blast2GO) pid=Bradi3g19270.1;tid=Bradi3g19270.1;GeneName=Bradi3g19270;transcript=eq;prot=eq + Bd3 No
BD3G22907 bdi pid=Bradi3g22907.1;tid=Bradi3g22907.1;GeneName=Bradi3g22907;transcript=eq;prot=eq + Bd3 No
BD5G02090 bdi hydroxypyruvate reductase activity, glyoxylate reductase activity, phosphoglycerate dehydrogenase activity, glycerate dehydrogenase activity, glyoxylate reductase (NADP) activity (Blast2GO) pid=Bradi5g02090.1;tid=Bradi5g02090.1;GeneName=Bradi5g02090;transcript=eq;prot=eq - Bd5 No
BD5G02100 bdi glyoxylate reductase activity, hydroxypyruvate reductase activity, transcription corepressor activity, transcription coactivator activity, phosphoglycerate dehydrogenase activity, glyoxylate reductase (NADP) activity, glycerate dehydrogenase activity (Blast2GO) pid=Bradi5g02100.1;tid=Bradi5g02100.1;GeneName=Bradi5g02100;transcript=eq;prot=eq + Bd5 No
BD5G02110 bdi hydroxypyruvate reductase activity, glyoxylate reductase activity, phosphoglycerate dehydrogenase activity, glycerate dehydrogenase activity, glyoxylate reductase (NADP) activity (Blast2GO) pid=Bradi5g02110.1;tid=Bradi5g02110.1;GeneName=Bradi5g02110;transcript=eq;prot=eq + Bd5 No
BD5G02130 bdi hydroxypyruvate reductase activity, glyoxylate reductase activity, phosphoglycerate dehydrogenase activity, glycerate dehydrogenase activity, glyoxylate reductase (NADP) activity (Blast2GO) pid=Bradi5g02130.1;tid=Bradi5g02130.1;GeneName=Bradi5g02130;transcript=eq;prot=eq + Bd5 No
BD5G02150 bdi glyoxylate reductase activity, hydroxypyruvate reductase activity, transcription corepressor activity, transcription coactivator activity, phosphoglycerate dehydrogenase activity, glyoxylate reductase (NADP) activity, glycerate dehydrogenase activity (Blast2GO) pid=Bradi5g02150.1;tid=Bradi5g02150.1;GeneName=Bradi5g02150;transcript=eq;prot=eq - Bd5 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier