Gene family  

Sub-families
ORTHO003586 (29 genes in 20 species)
ORTHO008002 (22 genes in 22 species)
ORTHO010289 (19 genes in 12 species)
View all sub-families (19)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (8 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (12 genes)
gma
Glycine max (16 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (22 genes)
mes
Manihot esculenta (11 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (9 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (12 genes)
zma
Zea mays (6 genes)



The gene family HOM000590 has 169 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 169 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G27920 aly name=fgenesh1_pm.C_scaffold_1002194;pid=313414;prot=eq;tid=313414 - scaffold_1 No
AL2G16210 aly name=fgenesh2_kg.2__1054__AT1G67990.1;pid=475924;prot=eq;tid=475924 - scaffold_2 No
AL2G16220 aly name=fgenesh2_kg.2__1055__AT1G67980.1;pid=475925;prot=eq;tid=475925 - scaffold_2 No
AL5G32950 aly name=fgenesh2_kg.5__2698__AT3G61990.1;pid=486706;prot=eq;tid=486706 - scaffold_5 No
AL5G32960 aly name=fgenesh2_kg.5__2699__AT3G62000.1;pid=486707;prot=eq;tid=486707 - scaffold_5 No
AL7G07010 aly name=scaffold_700739.1;pid=912997;prot=eq;tid=944510 - scaffold_7 No
AL7G15830 aly name=scaffold_701682.1;pid=913940;prot=eq;tid=945453 - scaffold_7 No
AT1G24735 ath S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: stem, leaf apex, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: caffeoyl-CoA 3-O-methyltransferase (TAIR:AT1G67980.1).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein transcript=eq;prot=eq; + 1 No
AT1G67980 ath Encodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase.;caffeoyl-CoA 3-O-methyltransferase transcript=eq;prot=eq; + 1 No
AT1G67990 ath Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein transcript=eq;prot=eq; + 1 No
AT3G61990 ath S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G62000.1); Has 5802 Blast hits to 5800 proteins in 1542 species: Archae - 71; Bacteria - 3331; Metazoa - 279; Fungi - 165; Plants - 612; Viruses - 0; Other Eukaryotes - 1344 (source: NCBI BLink).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein transcript=eq;prot=eq; - 3 No
AT3G62000 ath S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G61990.1).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein transcript=eq;prot=eq; - 3 No
AT4G26220 ath S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: shoot, inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage, seed development stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G34050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein transcript=eq;prot=eq; + 4 No
AT4G34050 ath caffeoyl coenzyme A O-methyltransferase 1 (CCoAOMT1); FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: coumarin biosynthetic process, response to cadmium ion; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26220.1); Has 5458 Blast hits to 5455 proteins in 1478 species: Archae - 33; Bacteria - 3172; Metazoa - 243; Fungi - 122; Plants - 614; Viruses - 0; Other Eukaryotes - 1274 (source: NCBI BLink).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein transcript=eq;prot=eq; + 4 No
BD1G48370 bdi Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) pid=Bradi1g48370.1;tid=Bradi1g48370.1;GeneName=Bradi1g48370;transcript=eq;prot=eq - Bd1 No
BD3G16950 bdi catechol O-methyltransferase activity (Blast2GO) pid=Bradi3g16950.1;tid=Bradi3g16950.1;GeneName=Bradi3g16950;transcript=eq;prot=eq - Bd3 No
BD3G39380 bdi Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) pid=Bradi3g39380.1;tid=Bradi3g39380.1;GeneName=Bradi3g39380;transcript=eq;prot=eq - Bd3 No
BD3G39390 bdi Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) pid=Bradi3g39390.1;tid=Bradi3g39390.1;GeneName=Bradi3g39390;transcript=eq;prot=eq + Bd3 No
BD3G39400 bdi Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) pid=Bradi3g39400.1;tid=Bradi3g39400.1;GeneName=Bradi3g39400;transcript=eq;prot=eq + Bd3 No
BD3G39410 bdi Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) pid=Bradi3g39410.1;tid=Bradi3g39410.1;GeneName=Bradi3g39410;transcript=eq;prot=eq + Bd3 No
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