Gene family 
- Id
- HOM000590
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO003586 (29 genes in 20 species)
ORTHO008002 (22 genes in 22 species)
ORTHO010289 (19 genes in 12 species)
View all sub-families (19)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (7 genes)
- ath
- Arabidopsis thaliana (7 genes)
- bdi
- Brachypodium distachyon (8 genes)
- cpa
- Carica papaya (5 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (12 genes)
- gma
- Glycine max (16 genes)
- lja
- Lotus japonicus (4 genes)
- mdo
- Malus domestica (22 genes)
- mes
- Manihot esculenta (11 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (5 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (5 genes)
- osaindica
- Oryza sativa ssp. indica (7 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (7 genes)
- rco
- Ricinus communis (9 genes)
- sbi
- Sorghum bicolor (7 genes)
- smo
- Selaginella moellendorffii (3 genes)
- tca
- Theobroma cacao (9 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (12 genes)
- zma
- Zea mays (6 genes)
The gene family HOM000590 has 169 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM000590
Page 1 of 9, showing 20 records out of 169 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G27920 | aly | name=fgenesh1_pm.C_scaffold_1002194;pid=313414;prot=eq;tid=313414 | - | scaffold_1 | No | |
| AL2G16210 | aly | name=fgenesh2_kg.2__1054__AT1G67990.1;pid=475924;prot=eq;tid=475924 | - | scaffold_2 | No | |
| AL2G16220 | aly | name=fgenesh2_kg.2__1055__AT1G67980.1;pid=475925;prot=eq;tid=475925 | - | scaffold_2 | No | |
| AL5G32950 | aly | name=fgenesh2_kg.5__2698__AT3G61990.1;pid=486706;prot=eq;tid=486706 | - | scaffold_5 | No | |
| AL5G32960 | aly | name=fgenesh2_kg.5__2699__AT3G62000.1;pid=486707;prot=eq;tid=486707 | - | scaffold_5 | No | |
| AL7G07010 | aly | name=scaffold_700739.1;pid=912997;prot=eq;tid=944510 | - | scaffold_7 | No | |
| AL7G15830 | aly | name=scaffold_701682.1;pid=913940;prot=eq;tid=945453 | - | scaffold_7 | No | |
| AT1G24735 | ath | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: stem, leaf apex, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: caffeoyl-CoA 3-O-methyltransferase (TAIR:AT1G67980.1).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | transcript=eq;prot=eq; | + | 1 | No |
| AT1G67980 | ath | Encodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase.;caffeoyl-CoA 3-O-methyltransferase | transcript=eq;prot=eq; | + | 1 | No |
| AT1G67990 | ath | Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | transcript=eq;prot=eq; | + | 1 | No |
| AT3G61990 | ath | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G62000.1); Has 5802 Blast hits to 5800 proteins in 1542 species: Archae - 71; Bacteria - 3331; Metazoa - 279; Fungi - 165; Plants - 612; Viruses - 0; Other Eukaryotes - 1344 (source: NCBI BLink).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | transcript=eq;prot=eq; | - | 3 | No |
| AT3G62000 | ath | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G61990.1).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | transcript=eq;prot=eq; | - | 3 | No |
| AT4G26220 | ath | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: O-methyltransferase activity; LOCATED IN: cytosol; EXPRESSED IN: shoot, inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage, seed development stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G34050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | transcript=eq;prot=eq; | + | 4 | No |
| AT4G34050 | ath | caffeoyl coenzyme A O-methyltransferase 1 (CCoAOMT1); FUNCTIONS IN: caffeoyl-CoA O-methyltransferase activity; INVOLVED IN: coumarin biosynthetic process, response to cadmium ion; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: O-methyltransferase, family 3 (InterPro:IPR002935); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26220.1); Has 5458 Blast hits to 5455 proteins in 1478 species: Archae - 33; Bacteria - 3172; Metazoa - 243; Fungi - 122; Plants - 614; Viruses - 0; Other Eukaryotes - 1274 (source: NCBI BLink).;S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | transcript=eq;prot=eq; | + | 4 | No |
| BD1G48370 | bdi | Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) | pid=Bradi1g48370.1;tid=Bradi1g48370.1;GeneName=Bradi1g48370;transcript=eq;prot=eq | - | Bd1 | No |
| BD3G16950 | bdi | catechol O-methyltransferase activity (Blast2GO) | pid=Bradi3g16950.1;tid=Bradi3g16950.1;GeneName=Bradi3g16950;transcript=eq;prot=eq | - | Bd3 | No |
| BD3G39380 | bdi | Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) | pid=Bradi3g39380.1;tid=Bradi3g39380.1;GeneName=Bradi3g39380;transcript=eq;prot=eq | - | Bd3 | No |
| BD3G39390 | bdi | Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) | pid=Bradi3g39390.1;tid=Bradi3g39390.1;GeneName=Bradi3g39390;transcript=eq;prot=eq | + | Bd3 | No |
| BD3G39400 | bdi | Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) | pid=Bradi3g39400.1;tid=Bradi3g39400.1;GeneName=Bradi3g39400;transcript=eq;prot=eq | + | Bd3 | No |
| BD3G39410 | bdi | Caffeoyl-CoA 3-O-methyltransferase (CCoAOMT) | pid=Bradi3g39410.1;tid=Bradi3g39410.1;GeneName=Bradi3g39410;transcript=eq;prot=eq | + | Bd3 | No |