Gene family  

Sub-families
ORTHO002839 (31 genes in 23 species)
ORTHO007766 (22 genes in 18 species)
ORTHO009579 (20 genes in 13 species)
View all sub-families (15)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (8 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (15 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (10 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (11 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (13 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (8 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (11 genes)
zma
Zea mays (12 genes)



The gene family HOM000589 has 169 genes in 25 species (28 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 169 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G05190 aly name=fgenesh1_pg.C_scaffold_142000001;pid=359357;prot=eq;tid=359357 - scaffold_142 No
AL2G26560 aly name=scaffold_202722.1;pid=895648;prot=eq;tid=927161 - scaffold_2 No
AL4G01720 aly name=scaffold_400177.1;pid=900676;prot=eq;tid=932189 + scaffold_4 Yes
AL6G10690 aly name=scaffold_601109.1;pid=909052;prot=eq;tid=940565 - scaffold_6 No
AL7G08200 aly name=Al_scaffold_0007_777;pid=857278;prot=eq;tid=888791 - scaffold_7 No
AL7G09670 aly name=fgenesh2_kg.7__980__AT4G31880.1;pid=491547;prot=eq;tid=491547 + scaffold_7 No
AL7G09960 aly name=scaffold_701049.1;pid=913307;prot=eq;tid=944820 + scaffold_7 No
AL8G00190 aly name=fgenesh2_kg.8__17__AT5G47690.1;pid=494201;prot=eq;tid=494201 - scaffold_8 No
AT1G15940 ath Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G80810.1); Has 113244 Blast hits to 64070 proteins in 2877 species: Archae - 468; Bacteria - 17745; Metazoa - 45816; Fungi - 13599; Plants - 5330; Viruses - 622; Other Eukaryotes - 29664 (source: NCBI BLink).;Tudor/PWWP/MBT superfamily protein transcript=eq;prot=eq; + 1 No
AT1G77600 ath ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G47690.2).;ARM repeat superfamily protein transcript=eq;prot=eq; - 1 No
AT1G80810 ath Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 103396 Blast hits to 54411 proteins in 2510 species: Archae - 599; Bacteria - 9234; Metazoa - 41155; Fungi - 13255; Plants - 5790; Viruses - 1058; Other Eukaryotes - 32305 (source: NCBI BLink).;Tudor/PWWP/MBT superfamily protein transcript=eq;prot=eq; + 1 No
AT2G22260 ath oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G22270.1); Has 1561 Blast hits to 1561 proteins in 515 species: Archae - 0; Bacteria - 839; Metazoa - 118; Fungi - 181; Plants - 86; Viruses - 14; Other Eukaryotes - 323 (source: NCBI BLink).;oxidoreductase, 2OG-Fe(II) oxygenase family protein transcript=eq;prot=eq; + 2 Yes
AT4G31880 ath LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). transcript=eq;prot=eq; - 4 No
AT5G10950 ath Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G80810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Tudor/PWWP/MBT superfamily protein transcript=eq;prot=eq; - 5 No
AT5G47690 ath binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G77600.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;binding transcript=eq;prot=eq; + 5 No
BD1G43440 bdi pid=Bradi1g43440.1;tid=Bradi1g43440.1;GeneName=Bradi1g43440;transcript=eq;prot=eq + Bd1 No
BD1G43447 bdi pid=Bradi1g43447.1;tid=Bradi1g43447.1;GeneName=Bradi1g43447;transcript=eq;prot=eq - Bd1 Yes
BD2G56230 bdi pid=Bradi2g56230.1;tid=Bradi2g56230.1;GeneName=Bradi2g56230;transcript=eq;prot=eq - Bd2 No
BD2G57070 bdi histone-lysine N-methyltransferase activity (Blast2GO) pid=Bradi2g57070.1;tid=Bradi2g57070.1;GeneName=Bradi2g57070;transcript=eq;prot=eq + Bd2 No
BD3G48580 bdi ATPase activity (Blast2GO) pid=Bradi3g48580.1;tid=Bradi3g48580.1;GeneName=Bradi3g48580;transcript=eq;prot=eq - Bd3 No
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