Gene family  

Sub-families
ORTHO001195 (41 genes in 23 species)
ORTHO001987 (34 genes in 18 species)
ORTHO013189 (14 genes in 12 species)
View all sub-families (15)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (20 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (23 genes)
mes
Manihot esculenta (10 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (12 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (11 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (9 genes)
zma
Zea mays (7 genes)



The gene family HOM000587 has 171 genes in 23 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 171 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G03720 aly name=fgenesh1_pg.C_scaffold_71000005;pid=359254;prot=eq;tid=359254 + scaffold_71 No
AL3G09100 aly name=fgenesh2_kg.3__908__AT3G08990.1;pid=478207;prot=eq;tid=478207 + scaffold_3 No
AL3G11640 aly name=fgenesh2_kg.3__1163__AT3G11230.1;pid=478462;prot=eq;tid=478462 + scaffold_3 No
AL4G26790 aly name=scaffold_402781.1;pid=903280;prot=eq;tid=934793 + scaffold_4 No
AL5G26100 aly name=scaffold_502727.1;pid=907023;prot=eq;tid=938536 + scaffold_5 No
AL7G14140 aly name=fgenesh1_pm.C_scaffold_7001143;pid=328916;prot=eq;tid=328916 - scaffold_7 No
AL8G18940 aly name=fgenesh2_kg.8__1290__AT5G53940.1;pid=495474;prot=eq;tid=495474 - scaffold_8 No
AT2G40110 ath Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT3G11230.2); Has 989 Blast hits to 989 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 470; Fungi - 205; Plants - 239; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).;Yippee family putative zinc-binding protein transcript=eq;prot=eq; + 2 No
AT3G08990 ath Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 986 Blast hits to 986 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 469; Fungi - 205; Plants - 239; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).;Yippee family putative zinc-binding protein transcript=eq;prot=eq; + 3 No
AT3G11230 ath Yippee family putative zinc-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 983 Blast hits to 983 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 469; Fungi - 200; Plants - 237; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).;Yippee family putative zinc-binding protein transcript=eq;prot=eq; + 3 No
AT3G55890 ath Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 985 Blast hits to 985 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 467; Fungi - 205; Plants - 238; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).;Yippee family putative zinc-binding protein transcript=eq;prot=eq; + 3 No
AT4G27740 ath Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT4G27745.1); Has 984 Blast hits to 980 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 457; Fungi - 211; Plants - 235; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).;Yippee family putative zinc-binding protein transcript=eq;prot=eq; + 4 No
AT4G27745 ath Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT5G53940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Yippee family putative zinc-binding protein transcript=eq;prot=eq; + 4 No
AT5G53940 ath Yippee family putative zinc-binding protein; CONTAINS InterPro DOMAIN/s: Yippee-like protein (InterPro:IPR004910); BEST Arabidopsis thaliana protein match is: Yippee family putative zinc-binding protein (TAIR:AT2G40110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Yippee family putative zinc-binding protein transcript=eq;prot=eq; - 5 No
BD1G11770 bdi pid=Bradi1g11770.1;tid=Bradi1g11770.1;GeneName=Bradi1g11770;transcript=eq;prot=eq - Bd1 No
BD1G23330 bdi pid=Bradi1g23330.1;tid=Bradi1g23330.1;GeneName=Bradi1g23330;transcript=eq;prot=eq - Bd1 No
BD4G07320 bdi zinc ion binding (Blast2GO) pid=Bradi4g07320.3;tid=Bradi4g07320.3;GeneName=Bradi4g07320;transcript=eq;prot=eq + Bd4 No
BD4G16460 bdi pid=Bradi4g16460.5;tid=Bradi4g16460.5;GeneName=Bradi4g16460;transcript=eq;prot=eq + Bd4 No
CP00003G01200 cpa name=evm.TU.supercontig_3.120;pid=evm.TU.supercontig_3.120;prot=eq;transcript=eq - supercontig_3 No
CP00003G01220 cpa name=evm.TU.supercontig_3.122;pid=evm.TU.supercontig_3.122;prot=eq;transcript=eq - supercontig_3 No
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