Gene family  

Sub-families
ORTHO000806 (47 genes in 23 species)
ORTHO004483 (27 genes in 23 species)
ORTHO005054 (26 genes in 19 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (8 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (8 genes)
mdo
Malus domestica (14 genes)
mes
Manihot esculenta (8 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (8 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (8 genes)
osaindica
Oryza sativa ssp. indica (11 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (17 genes)
rco
Ricinus communis (8 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (11 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (4 genes)



The gene family HOM000579 has 173 genes in 25 species (29 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 173 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G05660 aly name=scaffold_400578.1;pid=901077;prot=eq;tid=932590 + scaffold_4 No
AL5G12880 aly name=scaffold_501332.1;pid=905628;prot=eq;tid=937141 + scaffold_5 No
AL6G22610 aly name=fgenesh2_kg.6__2277__AT5G22875.2;pid=489143;prot=eq;tid=489143 + scaffold_6 Yes
AL7G16490 aly name=fgenesh2_kg.7__1695__AT4G25650.1;pid=492262;prot=eq;tid=492262 + scaffold_7 No
AT2G24820 ath translocon at the inner envelope membrane of chloroplasts 55-II (TIC55-II); FUNCTIONS IN: oxidoreductase activity, 2 iron, 2 sulfur cluster binding, chlorophyllide a oxygenase [overall] activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (TAIR:AT3G44880.1); Has 5409 Blast hits to 5405 proteins in 897 species: Archae - 6; Bacteria - 3841; Metazoa - 59; Fungi - 58; Plants - 409; Viruses - 0; Other Eukaryotes - 1036 (source: NCBI BLink).;translocon at the inner envelope membrane of chloroplasts 55-II transcript=eq;prot=eq; + 2 No
AT3G44880 ath Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.;Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain transcript=eq;prot=eq; + 3 No
AT4G25650 ath Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.;ACD1-like transcript=eq;prot=eq; - 4 No
AT5G22875 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; + 5 Yes
BD1G04810 bdi pid=Bradi1g04810.1;tid=Bradi1g04810.1;GeneName=Bradi1g04810;transcript=eq;prot=eq - Bd1 No
BD1G75270 bdi pid=Bradi1g75270.1;tid=Bradi1g75270.1;GeneName=Bradi1g75270;transcript=eq;prot=eq - Bd1 No
BD3G53860 bdi pid=Bradi3g53860.1;tid=Bradi3g53860.1;GeneName=Bradi3g53860;transcript=eq;prot=eq + Bd3 No
BD5G00560 bdi pid=Bradi5g00560.1;tid=Bradi5g00560.1;GeneName=Bradi5g00560;transcript=eq;prot=eq + Bd5 Yes
CP00047G00040 cpa name=evm.TU.supercontig_47.4;pid=evm.TU.supercontig_47.4;prot=eq;transcript=eq + supercontig_47 No
CP00047G00050 cpa name=evm.TU.supercontig_47.5;pid=evm.TU.supercontig_47.5;prot=eq;transcript=eq - supercontig_47 Yes
CP00119G00560 cpa name=evm.TU.supercontig_119.56;pid=evm.TU.supercontig_119.56;prot=eq;transcript=eq - supercontig_119 No
CP00119G00570 cpa name=evm.TU.supercontig_119.57;pid=evm.TU.supercontig_119.57;prot=eq;transcript=eq - supercontig_119 No
CP00148G00430 cpa name=evm.TU.supercontig_148.43;pid=evm.TU.supercontig_148.43;prot=eq;transcript=eq - supercontig_148 No
CR03G05280 cre name=Chlre2_kg.scaffold_9000142;pid=143911;prot=eq;tid=143911;transcript=eq - chromosome_3 Yes
CR06G11950 cre name=OVA_Chlre2_kg.scaffold_12000107;pid=206616;prot=eq;tid=206623;transcript=eq + chromosome_6 No
CR10G07210 cre name=e_gwW.4.36.1;pid=113560;prot=eq;tid=113560;transcript=eq + chromosome_10 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier