Gene family  

Sub-families
ORTHO007186 (23 genes in 17 species)
ORTHO008053 (22 genes in 16 species)
ORTHO011052 (18 genes in 15 species)
View all sub-families (15)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (8 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (7 genes)
fve
Fragaria vesca (7 genes)
gma
Glycine max (16 genes)
lja
Lotus japonicus (8 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (13 genes)
mtr
Medicago truncatula (7 genes)
osa
Oryza sativa ssp. japonica (9 genes)
osaindica
Oryza sativa ssp. indica (9 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (14 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (7 genes)
tca
Theobroma cacao (17 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (9 genes)



The gene family HOM000577 has 174 genes in 19 species (14 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 174 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G03900 aly name=fgenesh2_kg.1__387__AT1G04530.1;pid=470433;prot=eq;tid=470433 - scaffold_1 No
AL1G06870 aly name=fgenesh2_kg.1__699__AT1G07280.1;pid=470745;prot=eq;tid=470745 + scaffold_1 No
AL2G29680 aly name=fgenesh2_kg.2__2374__AT1G80130.1;pid=477244;prot=eq;tid=477244 + scaffold_2 No
AL4G14220 aly name=fgenesh2_kg.4__942__AT2G29670.1;pid=481882;prot=eq;tid=481882 - scaffold_4 No
AL5G15830 aly name=fgenesh2_kg.5__1077__AT3G47080.1;pid=485085;prot=eq;tid=485085 - scaffold_5 No
AL6G20510 aly name=fgenesh2_kg.6__2058__AT5G20190.1;pid=488924;prot=eq;tid=488924 + scaffold_6 No
AL7G09150 aly name=fgenesh2_kg.7__926__AT4G32340.1;pid=491493;prot=eq;tid=491493 + scaffold_7 No
AL7G24960 aly name=fgenesh2_kg.7__2510__AT4G17940.1;pid=493077;prot=eq;tid=493077 - scaffold_7 No
AT1G04530 ath Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G17940.1); Has 713 Blast hits to 362 proteins in 65 species: Archae - 10; Bacteria - 98; Metazoa - 37; Fungi - 8; Plants - 512; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 1 No
AT1G07280 ath Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29670.1); Has 604 Blast hits to 369 proteins in 73 species: Archae - 4; Bacteria - 161; Metazoa - 2; Fungi - 2; Plants - 383; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; + 1 No
AT1G80130 ath Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: response to oxidative stress; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G20190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 1 No
AT2G29670 ath Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G07280.3); Has 535 Blast hits to 340 proteins in 62 species: Archae - 10; Bacteria - 119; Metazoa - 2; Fungi - 0; Plants - 351; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 2 No
AT3G47080 ath Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G07280.3); Has 387 Blast hits to 270 proteins in 35 species: Archae - 8; Bacteria - 81; Metazoa - 0; Fungi - 0; Plants - 274; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 3 No
AT4G17940 ath Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G20190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; + 4 No
AT4G32340 ath Tetratricopeptide repeat (TPR)-like superfamily protein; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G80130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 4 No
AT5G20190 ath Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G80130.1); Has 458 Blast hits to 304 proteins in 39 species: Archae - 0; Bacteria - 85; Metazoa - 7; Fungi - 10; Plants - 317; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; + 5 No
BD1G36490 bdi pid=Bradi1g36490.1;tid=Bradi1g36490.1;GeneName=Bradi1g36490;transcript=eq;prot=eq - Bd1 No
BD1G75670 bdi pid=Bradi1g75670.1;tid=Bradi1g75670.1;GeneName=Bradi1g75670;transcript=eq;prot=eq - Bd1 No
BD2G23750 bdi pid=Bradi2g23750.1;tid=Bradi2g23750.1;GeneName=Bradi2g23750;transcript=eq;prot=eq + Bd2 No
BD2G55297 bdi pid=Bradi2g55297.1;tid=Bradi2g55297.1;GeneName=Bradi2g55297;transcript=eq;prot=eq + Bd2 No
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