Gene family  

Sub-families
ORTHO001434 (38 genes in 23 species)
ORTHO002664 (31 genes in 21 species)
ORTHO005606 (25 genes in 18 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (11 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (29 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (19 genes)
osa
Oryza sativa ssp. japonica (14 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (10 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (7 genes)



The gene family HOM000575 has 175 genes in 23 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 175 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G10180 aly name=fgenesh2_kg.2__700__ATCG00350.1;pid=475570;prot=eq;tid=475570 + scaffold_2 No
AL2G10190 aly name=fgenesh1_pm.C_scaffold_2000554;pid=315521;prot=eq;tid=315521 + scaffold_2 No
AL2G10200 aly name=scaffold_201040.1;pid=893966;prot=eq;tid=925479 + scaffold_2 No
AL2G10650 aly name=scaffold_201094.1;pid=894020;prot=eq;tid=925533 - scaffold_2 No
AL2G10660 aly name=fgenesh2_kg.2__725__ATCG00340.1;pid=475595;prot=eq;tid=475595 - scaffold_2 No
AL2G10670 aly name=fgenesh1_pm.C_scaffold_2000580;pid=315547;prot=eq;tid=315547 - scaffold_2 No
AL3G32380 aly name=scaffold_303460.1;pid=899490;prot=eq;tid=931003 - scaffold_3 No
AL6G06370 aly name=scaffold_600658.1;pid=908601;prot=eq;tid=940114 - scaffold_6 No
ATCG00330 ath 30S chloroplast ribosomal protein S14;chloroplast ribosomal protein S14 transcript=eq;prot=eq; - chloroplast No
ATCG00340 ath Encodes the D1 subunit of photosystem I and II reaction centers.;Photosystem I, PsaA/PsaB protein transcript=eq;prot=eq; - chloroplast No
ATCG00350 ath Encodes psaA protein comprising the reaction center for photosystem I along with psaB protein; hydrophobic protein encoded by the chloroplast genome.;Photosystem I, PsaA/PsaB protein transcript=eq;prot=eq; - chloroplast No
BD1G22865 bdi pid=Bradi1g22865.1;tid=Bradi1g22865.1;GeneName=Bradi1g22865;transcript=eq;prot=eq + Bd1 No
BD5G23843 bdi pid=Bradi5g23843.1;tid=Bradi5g23843.1;GeneName=Bradi5g23843;transcript=eq;prot=eq - Bd5 No
BD5G23844 bdi pid=Bradi5g23844.1;tid=Bradi5g23844.1;GeneName=Bradi5g23844;transcript=eq;prot=eq - Bd5 No
BD5G23845 bdi pid=Bradi5g23845.1;tid=Bradi5g23845.1;GeneName=Bradi5g23845;transcript=eq;prot=eq - Bd5 No
BDCG00320 bdi rps14;ribosomal protein S14;protein_id=ACF08638.1; transl_table=11; - chloroplast No
BDCG00330 bdi psaB;PSI p700 apoprotein A2;protein_id=ACF08639.1; transl_table=11; - chloroplast No
BDCG00340 bdi psaA;PsaA;protein_id=ACF08640.1; transl_table=11; - chloroplast No
CP00038G00340 cpa name=evm.TU.supercontig_38.34;pid=evm.TU.supercontig_38.34;prot=eq;transcript=eq - supercontig_38 No
CP00302G00020 cpa name=evm.TU.supercontig_302.4;pid=evm.TU.supercontig_302.4;prot=eq;transcript=eq + supercontig_302 No
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outlier