Gene family  

Sub-families
ORTHO004166 (28 genes in 15 species)
ORTHO006021 (25 genes in 24 species)
ORTHO011923 (16 genes in 11 species)
View all sub-families (19)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (12 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (13 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (15 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (12 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (15 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (11 genes)



The gene family HOM000574 has 175 genes in 25 species (22 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 175 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G01870 aly name=Al_scaffold_0001_183;pid=878416;prot=eq;tid=909929 + scaffold_1 No
AL3G12860 aly name=fgenesh2_kg.3__1301__AT3G12410.1;pid=478600;prot=eq;tid=478600 - scaffold_3 No
AL3G12870 aly name=fgenesh2_kg.3__1302__AT3G12420.1;pid=478601;prot=eq;tid=478601 - scaffold_3 Yes
AL3G12880 aly name=fgenesh1_pm.C_scaffold_3001032;pid=318016;prot=eq;tid=318016 - scaffold_3 Yes
AL3G12890 aly name=fgenesh2_kg.3__1303__AT3G12470.1;pid=478602;prot=eq;tid=478602 - scaffold_3 No
AL3G41780 aly name=scaffold_304423.1;pid=900453;prot=eq;tid=931966 + scaffold_3 No
AL4G12840 aly name=scaffold_401295.1;pid=901794;prot=eq;tid=933307 - scaffold_4 Yes
AL4G17540 aly name=Al_scaffold_0004_1710;pid=869547;prot=eq;tid=901060 + scaffold_4 No
AL4G21530 aly name=Al_scaffold_0004_2109;pid=869946;prot=eq;tid=901459 + scaffold_4 No
AL5G17610 aly name=scaffold_501823.1;pid=906119;prot=eq;tid=937632 - scaffold_5 Yes
AL7G30720 aly name=fgenesh2_kg.7__2957__AT4G13870.2;pid=493524;prot=eq;tid=493524 + scaffold_7 No
AT2G36110 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12460.1); Has 463 Blast hits to 452 proteins in 93 species: Archae - 0; Bacteria - 28; Metazoa - 189; Fungi - 6; Plants - 216; Viruses - 3; Other Eukaryotes - 21 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; + 2 No
AT3G12410 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12460.1); Has 208 Blast hits to 196 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 197; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; - 3 No
AT3G12420 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12410.1); Has 186 Blast hits to 178 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 175; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; - 3 No
AT3G12430 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12460.1); Has 196 Blast hits to 186 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 0; Plants - 179; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; - 3 No
AT3G12440 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12460.1); Has 4427 Blast hits to 1756 proteins in 258 species: Archae - 2; Bacteria - 264; Metazoa - 1342; Fungi - 272; Plants - 2053; Viruses - 93; Other Eukaryotes - 401 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; - 3 No
AT3G12460 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12430.1); Has 254 Blast hits to 240 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 43; Fungi - 4; Plants - 202; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; - 3 No
AT3G12470 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12410.1); Has 210 Blast hits to 197 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; - 3 No
AT4G13870 ath Encodes a protein with homology to the exonuclease domain of hWRN-p of human protein Werner Syndrome Exonuclease (WEX). Forms a complex with the heterodimeric factor Ku. The interaction with KU stimulates WEX exonuclease activity.;Werner syndrome-like exonuclease transcript=eq;prot=eq; - 4 No
AT4G13885 ath Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: 3'-5' exonuclease activity, nucleic acid binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), 3'-5' exonuclease (InterPro:IPR002562); BEST Arabidopsis thaliana protein match is: Werner syndrome-like exonuclease (TAIR:AT4G13870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Polynucleotidyl transferase, ribonuclease H-like superfamily protein transcript=eq;prot=eq; - 4 Yes
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier