Gene family  

Sub-families
ORTHO002221 (33 genes in 18 species)
ORTHO010791 (18 genes in 13 species)
ORTHO011391 (17 genes in 12 species)
View all sub-families (20)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (12 genes)
ath
Arabidopsis thaliana (13 genes)
bdi
Brachypodium distachyon (11 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (24 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (9 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (11 genes)
osaindica
Oryza sativa ssp. indica (13 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (16 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (11 genes)
tca
Theobroma cacao (8 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (11 genes)



The gene family HOM000566 has 177 genes in 19 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 177 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G00140 aly name=fgenesh2_kg.3__18__AT3G01950.1;pid=477317;prot=eq;tid=477317 - scaffold_3 No
AL3G00150 aly name=fgenesh2_kg.3__19__AT3G01940.1;pid=477318;prot=eq;tid=477318 + scaffold_3 No
AL5G05820 aly name=scaffold_500615.1;pid=904911;prot=eq;tid=936424 + scaffold_5 No
AL5G05830 aly name=fgenesh1_pm.C_scaffold_5000374;pid=322830;prot=eq;tid=322830 - scaffold_5 No
AL5G17520 aly name=fgenesh1_pm.C_scaffold_5001003;pid=323459;prot=eq;tid=323459 + scaffold_5 No
AL6G08160 aly name=fgenesh2_kg.6__807__AT5G08391.1;pid=487673;prot=eq;tid=487673 + scaffold_6 No
AL6G13870 aly name=scaffold_601425.1;pid=909368;prot=eq;tid=940881 - scaffold_6 No
AL7G36740 aly name=scaffold_703863.1;pid=916121;prot=eq;tid=947634 + scaffold_7 No
AL7G36750 aly name=fgenesh2_kg.7__3312__AT5G40970.1;pid=493879;prot=eq;tid=493879 - scaffold_7 No
AL7G36760 aly name=scaffold_703865.1;pid=916123;prot=eq;tid=947636 + scaffold_7 No
AL8G14800 aly name=fgenesh2_kg.8__936__AT5G50660.1;pid=495120;prot=eq;tid=495120 + scaffold_8 No
AL8G30050 aly name=scaffold_803038.1;pid=919638;prot=eq;tid=951151 + scaffold_8 No
AT3G01940 ath Protein of unknown function (DUF 3339); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT3G27027.1); Has 274 Blast hits to 269 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 274; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF 3339) transcript=eq;prot=eq; - 3 No
AT3G01950 ath Protein of unknown function (DUF 3339); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G14110.1); Has 274 Blast hits to 269 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 274; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF 3339) transcript=eq;prot=eq; + 3 No
AT3G27027 ath Protein of unknown function (DUF 3339); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Protein of unknown function (DUF 3339) transcript=eq;prot=eq; + 3 No
AT3G27030 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
AT3G48660 ath Protein of unknown function (DUF 3339); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G63500.1); Has 274 Blast hits to 269 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 274; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF 3339) transcript=eq;prot=eq; + 3 No
AT5G08391 ath Protein of unknown function (DUF 3339); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Protein of unknown function (DUF 3339) transcript=eq;prot=eq; + 5 No
AT5G14110 ath Protein of unknown function (DUF 3339); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT3G01950.1); Has 274 Blast hits to 269 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 274; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF 3339) transcript=eq;prot=eq; - 5 No
AT5G40960 ath Protein of unknown function (DUF 3339); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G08391.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Protein of unknown function (DUF 3339) transcript=eq;prot=eq; - 5 No
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