Gene family  

Sub-families
ORTHO001497 (38 genes in 19 species)
ORTHO009210 (20 genes in 18 species)
ORTHO010889 (18 genes in 15 species)
View all sub-families (17)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (17 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (17 genes)
mes
Manihot esculenta (9 genes)
mtr
Medicago truncatula (8 genes)
osa
Oryza sativa ssp. japonica (9 genes)
osaindica
Oryza sativa ssp. indica (10 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (16 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (10 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (9 genes)



The gene family HOM000560 has 179 genes in 21 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 9, showing 20 records out of 179 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G18410 aly name=scaffold_101949.1;pid=889155;prot=eq;tid=920668 + scaffold_1 Yes
AL1G36670 aly name=fgenesh2_kg.1__3598__AT1G31300.2;pid=473644;prot=eq;tid=473644 - scaffold_1 No
AL2G00680 aly name=fgenesh2_kg.2__54__AT1G64280.1;pid=474924;prot=eq;tid=474924 + scaffold_2 No
AL2G21490 aly name=scaffold_202195.1;pid=895121;prot=eq;tid=926634 + scaffold_2 No
AL6G32720 aly name=scaffold_603393.1;pid=911336;prot=eq;tid=942849 + scaffold_6 No
AL7G15940 aly name=fgenesh1_pm.C_scaffold_7001292;pid=329065;prot=eq;tid=329065 - scaffold_7 No
AL7G22860 aly name=Al_scaffold_0007_2194;pid=858695;prot=eq;tid=890208 + scaffold_7 No
AL7G22900 aly name=fgenesh2_kg.7__2335__AT4G19645.1;pid=492902;prot=eq;tid=492902 + scaffold_7 No
AL8G03930 aly name=fgenesh2_kg.8__285__AT5G45110.1;pid=494469;prot=eq;tid=494469 - scaffold_8 No
AL8G22640 aly name=fgenesh2_kg.8__1606__AT5G57000.2;pid=495790;prot=eq;tid=495790 - scaffold_8 No
AT1G17490 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 57 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 1 Yes
AT1G31300 ath TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT4G19645.2); Has 633 Blast hits to 633 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 146; Plants - 152; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).;TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein transcript=eq;prot=eq; + 1 No
AT1G64280 ath This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens.;regulatory protein (NPR1) transcript=eq;prot=eq; - 1 No
AT1G72690 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17490.1); Has 59 Blast hits to 45 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 1 No
AT4G10360 ath TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT1G31300.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein transcript=eq;prot=eq; + 4 No
AT4G19645 ath TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT1G31300.2); Has 553 Blast hits to 553 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 150; Plants - 160; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).;TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein transcript=eq;prot=eq; - 4 No
AT4G19660 ath Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways.;NPR1-like protein 4 transcript=eq;prot=eq; - 4 No
AT4G26120 ath Ankyrin repeat family protein / BTB/POZ domain-containing protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), NPR1/NIM1 like, C-terminal (InterPro:IPR021094), BTB/POZ fold (InterPro:IPR011333), Ankyrin repeat-containing domain (InterPro:IPR020683), BTB/POZ-like (InterPro:IPR000210), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: regulatory protein (NPR1) (TAIR:AT1G64280.1); Has 2068 Blast hits to 1653 proteins in 155 species: Archae - 0; Bacteria - 76; Metazoa - 627; Fungi - 31; Plants - 645; Viruses - 9; Other Eukaryotes - 680 (source: NCBI BLink).;Ankyrin repeat family protein / BTB/POZ domain-containing protein transcript=eq;prot=eq; + 4 No
AT5G45110 ath Encodes a paralog of NPR1. Involved in negative regulation of defense responses against bacterial and oomycete pathogens. npr3 mutants has elevated level of PR1 expression. Interacts with TGA2, TGA3, TGA5 and TGA6 in yeast two hybrid assays.;NPR1-like protein 3 transcript=eq;prot=eq; + 5 No
AT5G57000 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72690.1); Has 153 Blast hits to 116 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 33; Fungi - 7; Plants - 82; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier