Gene family  

Sub-families
ORTHO001338 (39 genes in 24 species)
ORTHO002151 (33 genes in 23 species)
ORTHO029475 (4 genes in 1 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (37 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (38 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (16 genes)
smo
Selaginella moellendorffii (8 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (5 genes)



The gene family HOM000550 has 182 genes in 24 species (20 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 10, showing 20 records out of 182 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G10260 aly name=scaffold_201045.1;pid=893971;prot=eq;tid=925484 + scaffold_2 No
AL2G10270 aly name=fgenesh1_pm.C_scaffold_2000558;pid=315525;prot=eq;tid=315525 + scaffold_2 No
ATCG00180 ath RNA polymerase beta' subunit-1;DNA-directed RNA polymerase family protein transcript=eq;prot=eq; - chloroplast No
ATCG00190 ath Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution.;RNA polymerase subunit beta transcript=eq;prot=eq; - chloroplast No
ATCG00220 ath PSII low MW protein;photosystem II reaction center protein M transcript=eq;prot=eq; - chloroplast Yes
BDCG00210 bdi psbM;PSII low MW protein;protein_id=ACF08629.1; transl_table=11; + chloroplast Yes
BDCG00240 bdi rpoB;RNA polymerase beta subunit;protein_id=ACF08631.1; transl_table=11; + chloroplast No
BDCG00250 bdi rpoC1;RNA polymerase beta' subunit-1;protein_id=ACF08632.1; transl_table=11; + chloroplast No
CP03766G00020 cpa name=evm.TU.supercontig_3766.2;pid=evm.TU.supercontig_3766.2;prot=eq;transcript=eq + supercontig_3766 No
CP45563G00010 cpa name=evm.TU.contig_45563.1;pid=evm.TU.contig_45563.1;prot=eq;transcript=eq + contig_45563 No
CPCG00190 cpa rpoC1;RNA polymerase beta' chain;protein_id=ABY86773.1; transl_table=11; - chloroplast No
CPCG00200 cpa rpoB;RNA polymerase beta chain;protein_id=ABY86774.1; transl_table=11; - chloroplast No
CPCG00230 cpa psbM;photosystem II protein M;protein_id=ABY86776.1; transl_table=11; - chloroplast Yes
CRCG00620 cre rpoB-2;RNA polymerase beta subunit II;protein_id=DAA00942.1; transl_table=11; - chloroplast No
CRCG00630 cre rpoB-1;RNA polymerase beta subunit I;protein_id=DAA00943.1; transl_table=11; - chloroplast No
CRCG01060 cre rpoC1b;chloroplast RNA polymerase beta' chain;protein_id=DAA00969.1; transl_table=11; - chloroplast No
CRCG01070 cre rpoC1a;chloroplast RNA polymerase beta' chain;protein_id=DAA00970.1; transl_table=11; - chloroplast No
FV0G52640 fve DNA-directed RNA polymerase subunit beta (RNA polymerase subunit beta) (similar to) transcript=eq;prot=eq;pid=gene35234 - scf0513206 No
FV0G53330 fve DNA-directed RNA polymerase subunit beta (RNA polymerase subunit beta) (similar to) transcript=eq;prot=eq;pid=gene32749 - scf0510746 No
FV0G57890 fve Probable protein phosphatase 2C 25 (AtPP2C25) transcript=eq;prot=eq;pid=gene32847 - scf0510889 Yes
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species
description
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chr
outlier