Gene family  

Sub-families
ORTHO000314 (69 genes in 24 species)
ORTHO002570 (32 genes in 24 species)
ORTHO006086 (25 genes in 22 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (12 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (16 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (22 genes)
mes
Manihot esculenta (10 genes)
mrcc299
Micromonas sp. RCC299 (5 genes)
mtr
Medicago truncatula (8 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (8 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (9 genes)



The gene family HOM000542 has 184 genes in 25 species (35 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 10, showing 20 records out of 184 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G11030 aly name=scaffold_101174.1;pid=888380;prot=eq;tid=919893 - scaffold_1 No
AL2G05130 aly name=fgenesh2_kg.2__375__AT1G60860.1;pid=475245;prot=eq;tid=475245 + scaffold_2 No
AL3G19050 aly name=fgenesh1_pm.C_scaffold_3001541;pid=318525;prot=eq;tid=318525 + scaffold_3 No
AL6G13030 aly name=fgenesh2_kg.6__1282__AT5G13300.1;pid=488148;prot=eq;tid=488148 - scaffold_6 No
AL8G19570 aly name=fgenesh2_kg.8__1332__AT5G54310.1;pid=495516;prot=eq;tid=495516 - scaffold_8 No
AL8G28230 aly name=fgenesh2_kg.8__2186__AT5G61970.1;pid=496370;prot=eq;tid=496370 + scaffold_8 Yes
AL8G28240 aly name=fgenesh2_kg.8__2187__AT5G61980.1;pid=496371;prot=eq;tid=496371 + scaffold_8 No
AT1G10870 ath A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD4 belongs to the Class 1, together with AGD1, AGD2, and AGD3.;ARF-GAP domain 4 transcript=eq;prot=eq; - 1 No
AT1G60860 ath A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4.;ARF-GAP domain 2 transcript=eq;prot=eq; - 1 No
AT3G17660 ath A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes; AGD15 belongs to the class 4, together with AGD14.;ARF-GAP domain 15 transcript=eq;prot=eq; + 3 No
AT5G13300 ath Belongs to 15-member small GTPase gene family, ARF-GAP domain proteins (AGD); corresponds to AGD3, and is one of four proteins belonging to class 1, together with AGD1, AGD2 and AGD4. The protein contains four domains: BAR domain, PH domain, an ARF-GAP domain, and two Ankyrin repeats. In sfc mutants, the secondary and tertiary veins of cotyledons, leaves, sepals and petals are largely replaced by small segments of discontinuous veins. sfc mutants have exaggerated responses to auxin.;ARF GTPase-activating protein transcript=eq;prot=eq; - 5 No
AT5G54310 ath A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. Regulates membrane trafficking and organ separation.;ARF-GAP domain 5 transcript=eq;prot=eq; - 5 No
AT5G61970 ath signal recognition particle-related / SRP-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;signal recognition particle-related / SRP-related transcript=eq;prot=eq; + 5 Yes
AT5G61980 ath A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD1 belongs to the class 1, together with AGD2, AGD3 and AGD4. Not expressed in hypocotyls and cotyledons.;ARF-GAP domain 1 transcript=eq;prot=eq; + 5 No
BD1G24680 bdi Rac GTPase activator activity (Blast2GO) pid=Bradi1g24680.1;tid=Bradi1g24680.1;GeneName=Bradi1g24680;transcript=eq;prot=eq + Bd1 No
BD3G07210 bdi pid=Bradi3g07210.1;tid=Bradi3g07210.1;GeneName=Bradi3g07210;transcript=eq;prot=eq - Bd3 Yes
BD3G41520 bdi zinc ion binding (Blast2GO) pid=Bradi3g41520.1;tid=Bradi3g41520.1;GeneName=Bradi3g41520;transcript=eq;prot=eq - Bd3 No
BD3G49447 bdi pid=Bradi3g49447.2;tid=Bradi3g49447.2;GeneName=Bradi3g49447;transcript=eq;prot=eq + Bd3 No
BD4G34880 bdi phosphatidylinositol binding, phosphatidylinositol-4,5-bisphosphate binding, phosphatidylinositol-3,4,5-triphosphate binding, small GTPase binding, phosphatidylinositol-3,4-bisphosphate binding, zinc ion binding, Rho GTPase activator activity (Blast2GO) pid=Bradi4g34880.1;tid=Bradi4g34880.1;GeneName=Bradi4g34880;transcript=eq;prot=eq - Bd4 No
CP00002G00510 cpa name=evm.TU.supercontig_2.51;pid=evm.TU.supercontig_2.51;prot=eq;transcript=eq - supercontig_2 No
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