Gene family  

Sub-families
ORTHO000522 (55 genes in 18 species)
ORTHO000795 (47 genes in 23 species)
ORTHO001801 (35 genes in 20 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (9 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (11 genes)
gma
Glycine max (16 genes)
lja
Lotus japonicus (9 genes)
mdo
Malus domestica (22 genes)
mes
Manihot esculenta (9 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (6 genes)
osa
Oryza sativa ssp. japonica (9 genes)
osaindica
Oryza sativa ssp. indica (10 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (9 genes)
zma
Zea mays (4 genes)



The gene family HOM000541 has 184 genes in 23 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 10, showing 20 records out of 184 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G32870 aly name=fgenesh1_pm.C_scaffold_1002530;pid=313750;prot=eq;tid=313750 + scaffold_1 No
AL1G32880 aly name=scaffold_103515.1;pid=890721;prot=eq;tid=922234 + scaffold_1 No
AL1G32890 aly name=scaffold_103516.1;pid=890722;prot=eq;tid=922235 + scaffold_1 No
AL2G02660 aly name=fgenesh2_kg.2__200__AT1G62810.1;pid=475070;prot=eq;tid=475070 + scaffold_2 No
AL4G29850 aly name=scaffold_403120.1;pid=903619;prot=eq;tid=935132 - scaffold_4 No
AL5G10790 aly name=scaffold_501112.1;pid=905408;prot=eq;tid=936921 + scaffold_5 No
AL5G11160 aly name=fgenesh2_kg.5__800__AT3G43670.1;pid=484808;prot=eq;tid=484808 + scaffold_5 No
AL5G11420 aly name=fgenesh1_pg.C_scaffold_5000859;pid=347467;prot=eq;tid=347467 - scaffold_5 No
AL6G35480 aly name=fgenesh1_pg.C_scaffold_6002907;pid=352314;prot=eq;tid=352314 + scaffold_6 No
AL6G35500 aly name=scaffold_603673.1;pid=911616;prot=eq;tid=943129 + scaffold_6 No
AL7G29030 aly name=fgenesh2_kg.7__2830__AT4G14940.1;pid=493397;prot=eq;tid=493397 - scaffold_7 No
AT1G31670 ath Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31690.1); Has 1560 Blast hits to 1555 proteins in 278 species: Archae - 14; Bacteria - 380; Metazoa - 250; Fungi - 453; Plants - 252; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).;Copper amine oxidase family protein transcript=eq;prot=eq; + 1 No
AT1G31690 ath Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Copper amine oxidase family protein transcript=eq;prot=eq; + 1 No
AT1G31710 ath Copper amine oxidase family protein; FUNCTIONS IN: primary amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31690.1); Has 1551 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 247; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).;Copper amine oxidase family protein transcript=eq;prot=eq; + 1 No
AT1G62810 ath Copper amine oxidase family protein; FUNCTIONS IN: primary amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT3G43670.1); Has 1558 Blast hits to 1554 proteins in 277 species: Archae - 14; Bacteria - 381; Metazoa - 247; Fungi - 454; Plants - 245; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).;Copper amine oxidase family protein transcript=eq;prot=eq; - 1 No
AT2G42490 ath Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT3G43670.1); Has 1554 Blast hits to 1550 proteins in 277 species: Archae - 14; Bacteria - 379; Metazoa - 243; Fungi - 461; Plants - 232; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).;Copper amine oxidase family protein transcript=eq;prot=eq; - 2 No
AT3G43670 ath Copper amine oxidase family protein; FUNCTIONS IN: primary amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1555 Blast hits to 1551 proteins in 277 species: Archae - 14; Bacteria - 383; Metazoa - 247; Fungi - 452; Plants - 241; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).;Copper amine oxidase family protein transcript=eq;prot=eq; + 3 No
AT4G12270 ath Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT4G12290.1); Has 1119 Blast hits to 1117 proteins in 236 species: Archae - 14; Bacteria - 358; Metazoa - 19; Fungi - 372; Plants - 223; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).;Copper amine oxidase family protein transcript=eq;prot=eq; + 4 No
AT4G12280 ath copper amine oxidase family protein; FUNCTIONS IN: primary amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT4G12290.1); Has 1450 Blast hits to 1448 proteins in 272 species: Archae - 14; Bacteria - 373; Metazoa - 250; Fungi - 447; Plants - 222; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).;copper amine oxidase family protein transcript=eq;prot=eq; + 4 No
AT4G12290 ath Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1550 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 243; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).;Copper amine oxidase family protein transcript=eq;prot=eq; + 4 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier