Gene family 
- Id
- HOM000541
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO000522 (55 genes in 18 species)
ORTHO000795 (47 genes in 23 species)
ORTHO001801 (35 genes in 20 species)
View all sub-families (10)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (11 genes)
- ath
- Arabidopsis thaliana (10 genes)
- bdi
- Brachypodium distachyon (4 genes)
- cpa
- Carica papaya (9 genes)
- cre
- Chlamydomonas reinhardtii (3 genes)
- fve
- Fragaria vesca (11 genes)
- gma
- Glycine max (16 genes)
- lja
- Lotus japonicus (9 genes)
- mdo
- Malus domestica (22 genes)
- mes
- Manihot esculenta (9 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (6 genes)
- osa
- Oryza sativa ssp. japonica (9 genes)
- osaindica
- Oryza sativa ssp. indica (10 genes)
- ppa
- Physcomitrella patens (5 genes)
- ptr
- Populus trichocarpa (10 genes)
- rco
- Ricinus communis (9 genes)
- sbi
- Sorghum bicolor (7 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (7 genes)
- vca
- Volvox carteri (2 genes)
- vvi
- Vitis vinifera (9 genes)
- zma
- Zea mays (4 genes)
The gene family HOM000541 has 184 genes in 23 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM000541
Page 1 of 10, showing 20 records out of 184 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G32870 | aly | name=fgenesh1_pm.C_scaffold_1002530;pid=313750;prot=eq;tid=313750 | + | scaffold_1 | No | |
| AL1G32880 | aly | name=scaffold_103515.1;pid=890721;prot=eq;tid=922234 | + | scaffold_1 | No | |
| AL1G32890 | aly | name=scaffold_103516.1;pid=890722;prot=eq;tid=922235 | + | scaffold_1 | No | |
| AL2G02660 | aly | name=fgenesh2_kg.2__200__AT1G62810.1;pid=475070;prot=eq;tid=475070 | + | scaffold_2 | No | |
| AL4G29850 | aly | name=scaffold_403120.1;pid=903619;prot=eq;tid=935132 | - | scaffold_4 | No | |
| AL5G10790 | aly | name=scaffold_501112.1;pid=905408;prot=eq;tid=936921 | + | scaffold_5 | No | |
| AL5G11160 | aly | name=fgenesh2_kg.5__800__AT3G43670.1;pid=484808;prot=eq;tid=484808 | + | scaffold_5 | No | |
| AL5G11420 | aly | name=fgenesh1_pg.C_scaffold_5000859;pid=347467;prot=eq;tid=347467 | - | scaffold_5 | No | |
| AL6G35480 | aly | name=fgenesh1_pg.C_scaffold_6002907;pid=352314;prot=eq;tid=352314 | + | scaffold_6 | No | |
| AL6G35500 | aly | name=scaffold_603673.1;pid=911616;prot=eq;tid=943129 | + | scaffold_6 | No | |
| AL7G29030 | aly | name=fgenesh2_kg.7__2830__AT4G14940.1;pid=493397;prot=eq;tid=493397 | - | scaffold_7 | No | |
| AT1G31670 | ath | Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31690.1); Has 1560 Blast hits to 1555 proteins in 278 species: Archae - 14; Bacteria - 380; Metazoa - 250; Fungi - 453; Plants - 252; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).;Copper amine oxidase family protein | transcript=eq;prot=eq; | + | 1 | No |
| AT1G31690 | ath | Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Copper amine oxidase family protein | transcript=eq;prot=eq; | + | 1 | No |
| AT1G31710 | ath | Copper amine oxidase family protein; FUNCTIONS IN: primary amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G31690.1); Has 1551 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 247; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).;Copper amine oxidase family protein | transcript=eq;prot=eq; | + | 1 | No |
| AT1G62810 | ath | Copper amine oxidase family protein; FUNCTIONS IN: primary amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT3G43670.1); Has 1558 Blast hits to 1554 proteins in 277 species: Archae - 14; Bacteria - 381; Metazoa - 247; Fungi - 454; Plants - 245; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).;Copper amine oxidase family protein | transcript=eq;prot=eq; | - | 1 | No |
| AT2G42490 | ath | Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT3G43670.1); Has 1554 Blast hits to 1550 proteins in 277 species: Archae - 14; Bacteria - 379; Metazoa - 243; Fungi - 461; Plants - 232; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).;Copper amine oxidase family protein | transcript=eq;prot=eq; | - | 2 | No |
| AT3G43670 | ath | Copper amine oxidase family protein; FUNCTIONS IN: primary amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1555 Blast hits to 1551 proteins in 277 species: Archae - 14; Bacteria - 383; Metazoa - 247; Fungi - 452; Plants - 241; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).;Copper amine oxidase family protein | transcript=eq;prot=eq; | + | 3 | No |
| AT4G12270 | ath | Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT4G12290.1); Has 1119 Blast hits to 1117 proteins in 236 species: Archae - 14; Bacteria - 358; Metazoa - 19; Fungi - 372; Plants - 223; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).;Copper amine oxidase family protein | transcript=eq;prot=eq; | + | 4 | No |
| AT4G12280 | ath | copper amine oxidase family protein; FUNCTIONS IN: primary amine oxidase activity, quinone binding, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT4G12290.1); Has 1450 Blast hits to 1448 proteins in 272 species: Archae - 14; Bacteria - 373; Metazoa - 250; Fungi - 447; Plants - 222; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink).;copper amine oxidase family protein | transcript=eq;prot=eq; | + | 4 | No |
| AT4G12290 | ath | Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2-terminal (InterPro:IPR015800), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT1G62810.1); Has 1550 Blast hits to 1547 proteins in 275 species: Archae - 14; Bacteria - 376; Metazoa - 251; Fungi - 449; Plants - 243; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).;Copper amine oxidase family protein | transcript=eq;prot=eq; | + | 4 | No |