Gene family  

Sub-families
ORTHO003693 (28 genes in 17 species)
ORTHO005199 (26 genes in 18 species)
ORTHO010235 (19 genes in 15 species)
View all sub-families (16)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (9 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (8 genes)
fve
Fragaria vesca (7 genes)
gma
Glycine max (22 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (15 genes)
mes
Manihot esculenta (11 genes)
mtr
Medicago truncatula (9 genes)
osa
Oryza sativa ssp. japonica (10 genes)
osaindica
Oryza sativa ssp. indica (8 genes)
ptr
Populus trichocarpa (14 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (8 genes)
tca
Theobroma cacao (7 genes)
vvi
Vitis vinifera (16 genes)
zma
Zea mays (10 genes)



The gene family HOM000529 has 187 genes in 18 species (14 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 10, showing 20 records out of 187 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G03430 aly name=Al_scaffold_0063_5;pid=855979;prot=eq;tid=887492 + scaffold_63 No
AL0G08180 aly name=fgenesh2_kg.386__2__AT5G63530.2;pid=497416;prot=eq;tid=497416 + scaffold_386 No
AL1G29890 aly name=fgenesh1_pg.C_scaffold_1002569;pid=336004;prot=eq;tid=336004 + scaffold_1 No
AL3G02180 aly name=fgenesh2_kg.3__243__AT3G02960.1;pid=477542;prot=eq;tid=477542 - scaffold_3 No
AL4G12000 aly name=fgenesh2_kg.4__761__AT2G28090.1;pid=481701;prot=eq;tid=481701 + scaffold_4 No
AL4G22510 aly name=fgenesh2_kg.4__1736__AT2G36950.1;pid=482676;prot=eq;tid=482676 + scaffold_4 No
AL6G02520 aly name=scaffold_600262.1;pid=908205;prot=eq;tid=939718 - scaffold_6 No
AL6G24670 aly name=fgenesh2_kg.6__2455__AT5G24580.2;pid=489321;prot=eq;tid=489321 - scaffold_6 No
AL8G14870 aly name=fgenesh2_kg.8__952__AT5G50740.1;pid=495136;prot=eq;tid=495136 - scaffold_8 No
AL8G26940 aly name=fgenesh2_kg.8__2044__AT5G60800.1;pid=496228;prot=eq;tid=496228 - scaffold_8 No
AL8G30100 aly name=fgenesh2_kg.8__2357__AT5G63530.2;pid=496541;prot=eq;tid=496541 + scaffold_8 No
AT1G29000 ath Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G50740.1); Has 54430 Blast hits to 26412 proteins in 1651 species: Archae - 256; Bacteria - 5932; Metazoa - 19157; Fungi - 5076; Plants - 2696; Viruses - 508; Other Eukaryotes - 20805 (source: NCBI BLink).;Heavy metal transport/detoxification superfamily protein transcript=eq;prot=eq; + 1 No
AT2G28090 ath Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G60800.1); Has 1449 Blast hits to 987 proteins in 81 species: Archae - 0; Bacteria - 64; Metazoa - 7; Fungi - 2; Plants - 1361; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).;Heavy metal transport/detoxification superfamily protein transcript=eq;prot=eq; - 2 No
AT2G36950 ath Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G03380.1); Has 2801 Blast hits to 1963 proteins in 260 species: Archae - 0; Bacteria - 269; Metazoa - 336; Fungi - 47; Plants - 1796; Viruses - 4; Other Eukaryotes - 349 (source: NCBI BLink).;Heavy metal transport/detoxification superfamily protein transcript=eq;prot=eq; + 2 No
AT3G02960 ath Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G50740.1); Has 1622 Blast hits to 1166 proteins in 99 species: Archae - 2; Bacteria - 66; Metazoa - 18; Fungi - 10; Plants - 1509; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).;Heavy metal transport/detoxification superfamily protein transcript=eq;prot=eq; - 3 No
AT5G03380 ath Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G36950.1); Has 4632 Blast hits to 3385 proteins in 434 species: Archae - 9; Bacteria - 451; Metazoa - 988; Fungi - 256; Plants - 2406; Viruses - 0; Other Eukaryotes - 522 (source: NCBI BLink).;Heavy metal transport/detoxification superfamily protein transcript=eq;prot=eq; - 5 No
AT5G24580 ath Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: copper ion transport, metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G50740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Heavy metal transport/detoxification superfamily protein transcript=eq;prot=eq; - 5 No
AT5G50740 ath Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: farnesylated protein 3 (TAIR:AT5G63530.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Heavy metal transport/detoxification superfamily protein transcript=eq;prot=eq; - 5 No
AT5G60800 ath Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G36950.1).;Heavy metal transport/detoxification superfamily protein transcript=eq;prot=eq; - 5 No
AT5G63530 ath Farnesylated protein that binds metals.;farnesylated protein 3 transcript=eq;prot=eq; + 5 No
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