Gene family  

Sub-families
ORTHO003232 (30 genes in 15 species)
ORTHO010413 (19 genes in 14 species)
ORTHO011016 (18 genes in 13 species)
View all sub-families (21)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (34 genes)
cpa
Carica papaya (8 genes)
fve
Fragaria vesca (7 genes)
lja
Lotus japonicus (10 genes)
mdo
Malus domestica (19 genes)
mes
Manihot esculenta (9 genes)
mtr
Medicago truncatula (7 genes)
osa
Oryza sativa ssp. japonica (12 genes)
osaindica
Oryza sativa ssp. indica (12 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (9 genes)
sbi
Sorghum bicolor (13 genes)
smo
Selaginella moellendorffii (9 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (12 genes)



The gene family HOM000527 has 188 genes in 20 species (22 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 10, showing 20 records out of 188 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G21040 aly name=fgenesh1_pg.C_scaffold_2001547;pid=339448;prot=eq;tid=339448 - scaffold_2 No
AT3G55350 ath PIF / Ping-Pong family of plant transposases; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G63270.1); Has 1213 Blast hits to 1213 proteins in 135 species: Archae - 0; Bacteria - 2; Metazoa - 520; Fungi - 50; Plants - 592; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).;PIF / Ping-Pong family of plant transposases transcript=eq;prot=eq; + 3 No
AT3G63270 ath CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
AT4G29780 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). transcript=eq;prot=eq; + 4 No
AT5G12010 ath unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
BD1G00290 bdi pid=Bradi1g00290.1;tid=Bradi1g00290.1;GeneName=Bradi1g00290;transcript=eq;prot=eq - Bd1 No
BD1G48390 bdi pid=Bradi1g48390.1;tid=Bradi1g48390.1;GeneName=Bradi1g48390;transcript=eq;prot=eq - Bd1 No
BD1G55847 bdi pid=Bradi1g55847.1;tid=Bradi1g55847.1;GeneName=Bradi1g55847;transcript=eq;prot=eq + Bd1 No
BD1G55857 bdi pid=Bradi1g55857.1;tid=Bradi1g55857.1;GeneName=Bradi1g55857;transcript=eq;prot=eq + Bd1 No
BD1G55870 bdi pid=Bradi1g55870.1;tid=Bradi1g55870.1;GeneName=Bradi1g55870;transcript=eq;prot=eq + Bd1 No
BD1G55877 bdi pid=Bradi1g55877.1;tid=Bradi1g55877.1;GeneName=Bradi1g55877;transcript=eq;prot=eq + Bd1 No
BD1G55890 bdi pid=Bradi1g55890.1;tid=Bradi1g55890.1;GeneName=Bradi1g55890;transcript=eq;prot=eq + Bd1 No
BD1G55920 bdi pid=Bradi1g55920.1;tid=Bradi1g55920.1;GeneName=Bradi1g55920;transcript=eq;prot=eq + Bd1 Yes
BD1G55930 bdi pid=Bradi1g55930.1;tid=Bradi1g55930.1;GeneName=Bradi1g55930;transcript=eq;prot=eq + Bd1 No
BD1G66070 bdi pid=Bradi1g66070.1;tid=Bradi1g66070.1;GeneName=Bradi1g66070;transcript=eq;prot=eq - Bd1 No
BD2G05540 bdi phospholipase A2 activity (Blast2GO) pid=Bradi2g05540.1;tid=Bradi2g05540.1;GeneName=Bradi2g05540;transcript=eq;prot=eq + Bd2 No
BD2G14410 bdi phospholipase A2 activity (Blast2GO) pid=Bradi2g14410.1;tid=Bradi2g14410.1;GeneName=Bradi2g14410;transcript=eq;prot=eq + Bd2 No
BD2G26920 bdi pid=Bradi2g26920.1;tid=Bradi2g26920.1;GeneName=Bradi2g26920;transcript=eq;prot=eq + Bd2 Yes
BD2G33510 bdi phospholipase A2 activity (Blast2GO) pid=Bradi2g33510.1;tid=Bradi2g33510.1;GeneName=Bradi2g33510;transcript=eq;prot=eq - Bd2 No
BD2G35000 bdi pid=Bradi2g35000.1;tid=Bradi2g35000.1;GeneName=Bradi2g35000;transcript=eq;prot=eq + Bd2 No
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