Gene family  

Sub-families
ORTHO002027 (34 genes in 19 species)
ORTHO006929 (23 genes in 18 species)
ORTHO012384 (15 genes in 13 species)
View all sub-families (21)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (11 genes)
ath
Arabidopsis thaliana (11 genes)
bdi
Brachypodium distachyon (15 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (15 genes)
gma
Glycine max (19 genes)
lja
Lotus japonicus (16 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (7 genes)
mtr
Medicago truncatula (7 genes)
osa
Oryza sativa ssp. japonica (10 genes)
osaindica
Oryza sativa ssp. indica (16 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (17 genes)
tca
Theobroma cacao (6 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (7 genes)



The gene family HOM000516 has 191 genes in 20 species (12 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 10, showing 20 records out of 191 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G14530 aly name=fgenesh2_kg.1__1492__AT1G13790.1;pid=471538;prot=eq;tid=471538 + scaffold_1 No
AL1G16810 aly name=fgenesh2_kg.1__1743__AT1G15910.1;pid=471789;prot=eq;tid=471789 + scaffold_1 No
AL1G38940 aly name=Al_scaffold_0001_3836;pid=882069;prot=eq;tid=913582 + scaffold_1 No
AL2G00810 aly name=scaffold_200085.1;pid=893011;prot=eq;tid=924524 - scaffold_2 No
AL2G28980 aly name=fgenesh1_pg.C_scaffold_2002242;pid=340143;prot=eq;tid=340143 + scaffold_2 No
AL3G12970 aly name=fgenesh1_pm.C_scaffold_3001040;pid=318024;prot=eq;tid=318024 + scaffold_3 No
AL5G09120 aly name=Al_scaffold_0005_872;pid=865393;prot=eq;tid=896906 + scaffold_5 No
AL5G10000 aly name=Al_scaffold_0005_955;pid=865476;prot=eq;tid=896989 + scaffold_5 No
AL5G17540 aly name=fgenesh2_kg.5__1214__AT3G48670.1;pid=485222;prot=eq;tid=485222 + scaffold_5 No
AL6G27460 aly name=scaffold_602855.1;pid=910798;prot=eq;tid=942311 - scaffold_6 No
AL8G25550 aly name=Al_scaffold_0008_2432;pid=886168;prot=eq;tid=917681 + scaffold_8 No
AT1G13790 ath XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT3G48670.2); Has 49019 Blast hits to 30980 proteins in 1872 species: Archae - 565; Bacteria - 6337; Metazoa - 23607; Fungi - 3326; Plants - 1659; Viruses - 198; Other Eukaryotes - 13327 (source: NCBI BLink).;XH/XS domain-containing protein transcript=eq;prot=eq; + 1 No
AT1G15910 ath XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT4G00380.1); Has 48628 Blast hits to 29972 proteins in 1836 species: Archae - 567; Bacteria - 5701; Metazoa - 24120; Fungi - 3416; Plants - 1878; Viruses - 163; Other Eukaryotes - 12783 (source: NCBI BLink).;XH/XS domain-containing protein transcript=eq;prot=eq; + 1 No
AT1G80790 ath XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G15910.1); Has 81745 Blast hits to 47168 proteins in 2099 species: Archae - 1218; Bacteria - 10615; Metazoa - 37220; Fungi - 5411; Plants - 3180; Viruses - 320; Other Eukaryotes - 23781 (source: NCBI BLink).;XH/XS domain-containing protein transcript=eq;prot=eq; + 1 No
AT2G16490 ath XH domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G15910.1); Has 169 Blast hits to 163 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;XH domain-containing protein transcript=eq;prot=eq; - 2 No
AT3G12550 ath XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT3G48670.2); Has 27730 Blast hits to 18970 proteins in 1489 species: Archae - 327; Bacteria - 3496; Metazoa - 13128; Fungi - 1662; Plants - 1039; Viruses - 83; Other Eukaryotes - 7995 (source: NCBI BLink).;XH/XS domain-containing protein transcript=eq;prot=eq; + 3 No
AT3G29375 ath XH domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G80790.1); Has 4410 Blast hits to 869 proteins in 187 species: Archae - 2; Bacteria - 84; Metazoa - 239; Fungi - 227; Plants - 231; Viruses - 48; Other Eukaryotes - 3579 (source: NCBI BLink).;XH domain-containing protein transcript=eq;prot=eq; + 3 No
AT3G48670 ath Encodes IDN2 (INVOLVED IN DE NOVO 2), a double-stranded RNA-binding protein involved in de novo methylation and small interfering RNA (siRNA)-mediated maintenance methylation. IND2 is a component of the RNA-directed DNA methylation pathway.;XH/XS domain-containing protein transcript=eq;prot=eq; + 3 No
AT4G00380 ath XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379), Domain of unknown function, putative Zinc finger, XS/XH (InterPro:IPR005381); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT1G15910.1); Has 52398 Blast hits to 32322 proteins in 2074 species: Archae - 615; Bacteria - 6626; Metazoa - 25839; Fungi - 3724; Plants - 1961; Viruses - 202; Other Eukaryotes - 13431 (source: NCBI BLink).;XH/XS domain-containing protein transcript=eq;prot=eq; + 4 No
AT4G01180 ath XH/XS domain-containing protein; CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380), Domain of unknown function XH (InterPro:IPR005379); BEST Arabidopsis thaliana protein match is: XH/XS domain-containing protein (TAIR:AT5G59390.1); Has 49488 Blast hits to 31983 proteins in 1865 species: Archae - 714; Bacteria - 6983; Metazoa - 22984; Fungi - 2858; Plants - 1632; Viruses - 165; Other Eukaryotes - 14152 (source: NCBI BLink).;XH/XS domain-containing protein transcript=eq;prot=eq; - 4 No
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