Gene family  

Sub-families
ORTHO003319 (29 genes in 23 species)
ORTHO005320 (26 genes in 18 species)
ORTHO005663 (25 genes in 18 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (12 genes)
ath
Arabidopsis thaliana (11 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (6 genes)
gma
Glycine max (22 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (27 genes)
mes
Manihot esculenta (10 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (8 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (9 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (13 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (6 genes)
tca
Theobroma cacao (9 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (11 genes)



The gene family HOM000510 has 193 genes in 24 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 10, showing 20 records out of 193 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G11470 aly name=scaffold_96200001.1;pid=921102;prot=eq;tid=952615 + scaffold_962 Yes
AL0G11480 aly name=scaffold_96200002.1;pid=921103;prot=eq;tid=952616 + scaffold_962 No
AL1G02970 aly name=fgenesh2_kg.1__295__AT1G03700.1;pid=470341;prot=eq;tid=470341 + scaffold_1 No
AL1G31820 aly name=fgenesh2_kg.1__3248__AT1G30630.1;pid=473294;prot=eq;tid=473294 - scaffold_1 No
AL3G06500 aly name=fgenesh2_kg.3__643__AT3G06390.1;pid=477942;prot=eq;tid=477942 - scaffold_3 No
AL6G37720 aly name=fgenesh1_pm.C_scaffold_6002691;pid=327471;prot=eq;tid=327471 - scaffold_6 No
AL7G17070 aly name=fgenesh2_kg.7__1766__AT4G25040.1;pid=492333;prot=eq;tid=492333 - scaffold_7 No
AL7G22060 aly name=fgenesh2_kg.7__2255__AT4G20390.1;pid=492822;prot=eq;tid=492822 - scaffold_7 No
AL7G28090 aly name=fgenesh2_kg.7__2755__AT4G15630.1;pid=493322;prot=eq;tid=493322 - scaffold_7 No
AL7G28100 aly name=fgenesh2_kg.7__2756__AT4G15620.1;pid=493323;prot=eq;tid=493323 - scaffold_7 No
AL7G28110 aly name=scaffold_702978.1;pid=915236;prot=eq;tid=946749 - scaffold_7 No
AL8G05130 aly name=Al_scaffold_0008_502;pid=884238;prot=eq;tid=915751 + scaffold_8 No
AT1G03700 ath Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G03540.1); Has 592 Blast hits to 592 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 592; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Uncharacterised protein family (UPF0497) transcript=eq;prot=eq; + 1 No
AT1G30630 ath Coatomer epsilon subunit; FUNCTIONS IN: protein transporter activity, structural molecule activity, binding; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Coatomer, epsilon subunit (InterPro:IPR006822); BEST Arabidopsis thaliana protein match is: Coatomer epsilon subunit (TAIR:AT2G34840.1); Has 442 Blast hits to 442 proteins in 180 species: Archae - 6; Bacteria - 14; Metazoa - 175; Fungi - 90; Plants - 92; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).;Coatomer epsilon subunit transcript=eq;prot=eq; - 1 No
AT2G34840 ath Coatomer epsilon subunit; FUNCTIONS IN: protein transporter activity, structural molecule activity, binding; INVOLVED IN: retrograde vesicle-mediated transport, Golgi to ER; LOCATED IN: COPI vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Coatomer, epsilon subunit (InterPro:IPR006822); BEST Arabidopsis thaliana protein match is: Coatomer epsilon subunit (TAIR:AT1G30630.1); Has 446 Blast hits to 446 proteins in 187 species: Archae - 0; Bacteria - 10; Metazoa - 175; Fungi - 107; Plants - 92; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).;Coatomer epsilon subunit transcript=eq;prot=eq; + 2 No
AT3G06390 ath Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G15610.1); Has 628 Blast hits to 628 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 628; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Uncharacterised protein family (UPF0497) transcript=eq;prot=eq; - 3 No
AT4G03540 ath Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT1G03700.1); Has 607 Blast hits to 607 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Uncharacterised protein family (UPF0497) transcript=eq;prot=eq; + 4 No
AT4G15610 ath Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G06390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Uncharacterised protein family (UPF0497) transcript=eq;prot=eq; + 4 No
AT4G15620 ath Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G15630.1); Has 622 Blast hits to 622 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 622; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Uncharacterised protein family (UPF0497) transcript=eq;prot=eq; + 4 No
AT4G15630 ath Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT4G15620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Uncharacterised protein family (UPF0497) transcript=eq;prot=eq; + 4 No
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