Gene family  

Sub-families
ORTHO000173 (87 genes in 20 species)
ORTHO001158 (41 genes in 22 species)
ORTHO006539 (24 genes in 20 species)
View all sub-families (11)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (12 genes)
ath
Arabidopsis thaliana (12 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (10 genes)
cre
Chlamydomonas reinhardtii (5 genes)
fve
Fragaria vesca (6 genes)
gma
Glycine max (18 genes)
lja
Lotus japonicus (8 genes)
mdo
Malus domestica (13 genes)
mes
Manihot esculenta (9 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (6 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (15 genes)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (8 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (4 genes)
vvi
Vitis vinifera (7 genes)
zma
Zea mays (11 genes)



The gene family HOM000499 has 196 genes in 25 species (28 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 10, showing 20 records out of 196 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G09830 aly name=Al_scaffold_0658_1;pid=856278;prot=eq;tid=887791 + scaffold_658 No
AL1G13790 aly name=fgenesh2_kg.1__1424__AT1G13170.1;pid=471470;prot=eq;tid=471470 - scaffold_1 No
AL2G26690 aly name=fgenesh2_kg.2__2066__AT1G77730.1;pid=476936;prot=eq;tid=476936 + scaffold_2 No
AL3G09460 aly name=fgenesh2_kg.3__946__AT3G09300.1;pid=478245;prot=eq;tid=478245 + scaffold_3 No
AL4G15780 aly name=fgenesh2_kg.4__1086__AT2G31020.1;pid=482026;prot=eq;tid=482026 + scaffold_4 No
AL4G15790 aly name=scaffold_401617.1;pid=902116;prot=eq;tid=933629 + scaffold_4 No
AL5G04710 aly name=fgenesh2_kg.5__369__AT3G26115.2;pid=484377;prot=eq;tid=484377 + scaffold_5 Yes
AL6G01220 aly name=fgenesh1_pm.C_scaffold_6000103;pid=324883;prot=eq;tid=324883 + scaffold_6 No
AL6G30320 aly name=fgenesh2_kg.6__2867__AT4G08180.3;pid=489733;prot=eq;tid=489733 + scaffold_6 No
AL6G35720 aly name=fgenesh2_kg.6__3184__AT4G12460.1;pid=490050;prot=eq;tid=490050 + scaffold_6 No
AL7G19720 aly name=fgenesh2_kg.7__2048__AT4G22540.1;pid=492615;prot=eq;tid=492615 + scaffold_7 No
AL8G25580 aly name=fgenesh2_kg.8__1885__AT5G59420.1;pid=496069;prot=eq;tid=496069 + scaffold_8 No
AT1G13170 ath OSBP(oxysterol binding protein)-related protein 1D (ORP1D); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.1).;OSBP(oxysterol binding protein)-related protein 1D transcript=eq;prot=eq; - 1 No
AT1G77730 ath Pleckstrin homology (PH) domain superfamily protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.3); Has 729 Blast hits to 728 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 485; Fungi - 91; Plants - 115; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).;Pleckstrin homology (PH) domain superfamily protein transcript=eq;prot=eq; + 1 No
AT2G31020 ath OSBP(oxysterol binding protein)-related protein 1A (ORP1A); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.1); Has 2870 Blast hits to 2614 proteins in 228 species: Archae - 2; Bacteria - 10; Metazoa - 1527; Fungi - 710; Plants - 301; Viruses - 8; Other Eukaryotes - 312 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 1A transcript=eq;prot=eq; + 2 No
AT2G31030 ath OSBP(oxysterol binding protein)-related protein 1B (ORP1B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1A (TAIR:AT2G31020.1); Has 2291 Blast hits to 2240 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1139; Fungi - 602; Plants - 285; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 1B transcript=eq;prot=eq; + 2 No
AT2G31035 ath BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1B (TAIR:AT2G31030.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 2 Yes
AT3G09300 ath OSBP(oxysterol binding protein)-related protein 3B (ORP3B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein, conserved site (InterPro:IPR018494), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: Oxysterol-binding family protein (TAIR:AT5G02100.1); Has 2352 Blast hits to 2318 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 1124; Fungi - 669; Plants - 282; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 3B transcript=eq;prot=eq; + 3 No
AT3G26115 ath Pyridoxal-5'-phosphate-dependent enzyme family protein; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: D-cysteine desulfhydrase (TAIR:AT1G48420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Pyridoxal-5'-phosphate-dependent enzyme family protein transcript=eq;prot=eq; + 3 Yes
AT4G08180 ath OSBP(oxysterol binding protein)-related protein 1C (ORP1C); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1A (TAIR:AT2G31020.1); Has 2760 Blast hits to 2567 proteins in 218 species: Archae - 0; Bacteria - 4; Metazoa - 1466; Fungi - 697; Plants - 301; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 1C transcript=eq;prot=eq; + 4 No
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