Gene family  

Sub-families
ORTHO000269 (73 genes in 25 species)
ORTHO004234 (27 genes in 22 species)
ORTHO009226 (20 genes in 20 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (10 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (7 genes)
cpa
Carica papaya (6 genes)
cre
Chlamydomonas reinhardtii (5 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (10 genes)
mdo
Malus domestica (20 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (27 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (7 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (6 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (6 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (6 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (6 genes)



The gene family HOM000498 has 197 genes in 25 species (11 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 10, showing 20 records out of 197 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G17580 aly name=fgenesh1_pm.C_scaffold_1001423;pid=312643;prot=eq;tid=312643 + scaffold_1 No
AL1G17590 aly name=Al_scaffold_0001_1729;pid=879962;prot=eq;tid=911475 + scaffold_1 No
AL1G17600 aly name=fgenesh2_kg.1__1822__AT1G16720.1;pid=471868;prot=eq;tid=471868 + scaffold_1 No
AL1G50810 aly name=fgenesh1_pg.C_scaffold_1004250;pid=337685;prot=eq;tid=337685 - scaffold_1 No
AL2G15070 aly name=fgenesh2_kg.2__948__AT1G67210.1;pid=475818;prot=eq;tid=475818 + scaffold_2 No
AL2G15080 aly name=scaffold_201525.1;pid=894451;prot=eq;tid=925964 + scaffold_2 No
AL2G28040 aly name=fgenesh2_kg.2__2199__AT1G79000.1;pid=477069;prot=eq;tid=477069 - scaffold_2 No
AL3G13430 aly name=scaffold_301479.1;pid=897509;prot=eq;tid=929022 + scaffold_3 No
AL6G15860 aly name=fgenesh2_kg.6__1574__AT5G16020.1;pid=488440;prot=eq;tid=488440 + scaffold_6 No
AL7G39900 aly name=fgenesh2_kg.7__3541__AT5G38600.1;pid=494108;prot=eq;tid=494108 - scaffold_7 No
AT1G16705 ath p300/CBP acetyltransferase-related protein-related; BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 12 (TAIR:AT1G16710.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;p300/CBP acetyltransferase-related protein-related transcript=eq;prot=eq; + 1 No
AT1G16710 ath Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides.;histone acetyltransferase of the CBP family 12 transcript=eq;prot=eq; + 1 No
AT1G16720 ath Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.;high chlorophyll fluorescence phenotype 173 transcript=eq;prot=eq; + 1 No
AT1G55970 ath HAC4 is most likely to be an expressed pseudogene that lacks HAT function. there is a single nucleotide deletion in both the HAC4 genomic and cDNA sequences relative to its homologs. The resulting frameshift within the open reading frame causes a stop codon to occur within the predicted acetyltransferase catalytic domain.;histone acetyltransferase of the CBP family 4 transcript=eq;prot=eq; - 1 No
AT1G67210 ath Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (TAIR:AT5G38600.1); Has 197 Blast hits to 197 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 6; Plants - 67; Viruses - 4; Other Eukaryotes - 16 (source: NCBI BLink).;Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein transcript=eq;prot=eq; + 1 No
AT1G67220 ath histone acetyltransferase of the CBP family 2 (HAC2); FUNCTIONS IN: histone acetyltransferase activity, transcription cofactor activity, DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: shoot apical meristem, root, flower, leaf; CONTAINS InterPro DOMAIN/s: Histone H3-K56 acetyltransferase, RTT109 (InterPro:IPR013178), Zinc finger, TAZ-type (InterPro:IPR000197), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the CBP family 1 (TAIR:AT1G79000.1); Has 1838 Blast hits to 1436 proteins in 226 species: Archae - 0; Bacteria - 234; Metazoa - 975; Fungi - 55; Plants - 202; Viruses - 0; Other Eukaryotes - 372 (source: NCBI BLink).;histone acetyltransferase of the CBP family 2 transcript=eq;prot=eq; + 1 No
AT1G79000 ath Homologous to CREB-binding protein, a co-activator of transcription with histone acetyl-transferase activity. No single prior lysine acetylation is sufficient to block HAC1 acetylation of the H3 or H4 peptides, suggesting that HAC1, HAC5, and HAC12 can acetylate any of several lysines present in the peptides. HAM2 acetylates histone H4 lysine 5. A plant line expressing an RNAi construct targeted against HAC1 has reduced rates of agrobacterium-mediated root transformation.;histone acetyltransferase of the CBP family 1 transcript=eq;prot=eq; - 1 No
AT3G12980 ath Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC5 acetylation of the H3 or H4 peptides, suggesting that HAC5 can acetylate any of several lysines present in the peptides. Di-acetylation of both lysines 9 and 14 on the H3 peptide significantly reduces the level of incorporated radioactive acetylation catalyzed by HAC5, indicating that HAC5 may acetylate either lysine 9 or lysine 14.;histone acetyltransferase of the CBP family 5 transcript=eq;prot=eq; + 3 No
AT5G16020 ath Encodes GEX3, a plasma membrane localized protein expressed in the male gametophyte. Required for micropylar pollen tube guidance. Also plays a role during early embryogenesis.;gamete-expressed 3 transcript=eq;prot=eq; + 5 No
AT5G38600 ath Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (TAIR:AT1G67210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein transcript=eq;prot=eq; + 5 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier